CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
endoplasmic reticulum 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75517	Soybean	plastid	88.43	88.6
VIT_01s0011g02850.t01	Wine grape	plastid	51.87	48.26
Bra017353.1-P	Field mustard	plastid	46.08	45.74
CDY59871	Canola	plastid	46.46	45.69
CDY04174	Canola	plastid	45.9	45.56
PGSC0003DMT400002108	Potato	plastid	48.51	45.06
AT3G25680.1	Thale cress	plastid	46.83	44.98
Solyc05g009940.2.1	Tomato	plastid	47.2	43.85
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	20.15	40.3
TraesCS7D01G229800.1	Wheat	plastid	36.94	35.68
TraesCS7A01G228700.1	Wheat	plastid	36.94	35.68
TraesCS7B01G195000.1	Wheat	plastid	36.38	35.14
KXG19937	Sorghum	mitochondrion	34.89	33.51
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	20.34	33.44
Zm00001d045938_P005	Maize	mitochondrion, plastid	34.89	33.39
Zm00001d037438_P002	Maize	plastid	34.14	32.62
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	34.33	31.62
Os06t0499000-01	Rice	plastid	18.47	29.29
KRH38456	Soybean	plastid	28.54	17.35
KRG91542	Soybean	plastid	22.01	16.83
KRH08938	Soybean	plastid	28.17	15.49
KRH35286	Soybean	plastid	26.68	15.2

Protein Annotations

EMBL:ACUP02000786	EnsemblPlants:KRH70626	EnsemblPlantsGene:GLYMA_02G101200	EntrezGene:100813930	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	ProteinID:KRH70626	ProteinID:KRH70626.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002337781	UniProt:K7K7H0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:-:9546571..9551312

Molecular Weight (calculated)

60614.7 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.410

Length

536 amino acids

Sequence
(BLAST)

001: MWSATSSPSI FLPHSLLRPL PRRPLCASLS WASPDPPDGL GGWALPDIPA QPNNNNKVAA FPSYAIVGFG TSLAFVLAVF AASRKGFIFR FPRPMWSAVE
101: TRHDQNDARE FDVSGGSKST LSEADTEDNN VAVTQTDKSV VVEKPKRVVI PVCVDSTQEE ALSVLKSLKI IEDDVEANEL CTRREFARWL VKLNSSLERN
201: PKHRIAPIVS LSGSVFTAFD DISIDDPDFR SIQVLAEAGV IPSKLSWNNS FDYGGFDTQQ NINFFPDRFI SRQDLIDWRA QLEYDFFSGV VDQISIKKAG
301: YMDVKEIISS AVYVDMLAGD KSILRKVFGQ SKRFQPNKPS TKAQAVVALT GGRMKEAISA ELLRIEAENS ARLAEAEEIR SELLSRGDIQ RFWDEKLNEE
401: KNRGFDVERL YHMEVKNLEE EEINQDKISA EYLKEKAAMD CQKQLLLNLK KEVDEISEKV ALERVTYVDE RHVVQKLLGD LELKHEELLN TKSTLEAEKE
501: ALQILRSWVE DEARRSQARA AVLEEVGRRW KWDDQA

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.