Factsheet for Zm00001d045938_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19937	Sorghum	mitochondrion	89.29	89.61
Zm00001d037438_P002	Maize	plastid	87.14	86.99
TraesCS7A01G228700.1	Wheat	plastid	62.5	63.06
TraesCS7D01G229800.1	Wheat	plastid	62.5	63.06
TraesCS7B01G195000.1	Wheat	plastid	62.32	62.88
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	56.43	54.3
Os06t0499000-01	Rice	plastid	32.32	53.55
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	19.46	40.67
Bra017353.1-P	Field mustard	plastid	34.29	35.56
CDY04174	Canola	plastid	34.29	35.56
CDY59871	Canola	plastid	34.29	35.23
KRH75517	Soybean	plastid	33.57	35.14
KRH70626	Soybean	plastid	33.39	34.89
VIT_01s0011g02850.t01	Wine grape	plastid	34.46	33.51
AT3G25680.1	Thale cress	plastid	33.04	33.15
PGSC0003DMT400002108	Potato	plastid	33.93	32.93
Solyc05g009940.2.1	Tomato	plastid	33.75	32.76
Zm00001d041148_P001	Maize	cytosol	19.29	30.17
Zm00001d020493_P001	Maize	cytosol	14.82	20.29
Zm00001d034935_P007	Maize	plastid	26.25	14.5

Protein Annotations

EMBL:BT065763	EnsemblPlants:Zm00001d045938_P005	EnsemblPlants:Zm00001d045938_T005	EnsemblPlantsGene:Zm00001d045938	EntrezGene:100277914	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	ProteinID:AQL03449.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000194B35E	UniProt:C0PBU4	MapMan:35.2	:

Description

Expressed protein; protein

Coordinates

chr9:-:47945117..47971767

Molecular Weight (calculated)

63115.9 Da

IEP (calculated)

5.023

GRAVY (calculated)

-0.476

Length

560 amino acids

Sequence
(BLAST)

001: MAVGLYSLGL SPPPRLDTIL FPQLRPHLRR RVPARVAAAG TSWSPAAGDS EDGVGGWWFP EYEKSMKQAR GRIGFKRAVV VGLGASAAIA LAGLAWRFPS
101: SQKRIQQLIV APLHYVQEKL PTIESTETTK EDASDRESDE IEVSSATHDK KAEAITDDSR QNYRTTIASP FPFGVPTDPV HEEALSVLKK LQIIEKDVSS
201: SDFCTRKEFA RWFVKLCSKF ERKKMQRIVP NKLTSGTVQC AFDDVNIDHP DFLYIQSLGE SGIISSKLSN SLETLTTGSP SQGNSLFLPD SYLSRFDLVN
301: WKVLVEHPCA LEIDQKMLSQ NVCILDLRAC PDVSPSMLIE LMAGENSIIS RVFGNTRRLQ PHKPVTKAQA AAALTSGRMK EAIQEELNRL EADNQARLSV
401: IAEITEELIN RGDIQQQWEE KMKTEQERAL EVDNNLQHVL DELANERADR EEELAVLLKE RAALERKNQE LINLRLEVDG MYDRLATENE EVMADQQTLE
501: NQLSDMTSKH QAVNEAKSYL EAEKEALTML RTWVEDEAAH VHERAETLEK ALRRWRIPED

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.