Factsheet for Bra017353.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
nucleus 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04174	Canola	plastid	99.63	99.63
AT3G25680.1	Thale cress	plastid	75.37	72.94
KRH70626	Soybean	plastid	45.74	46.08
KRH75517	Soybean	plastid	44.81	45.23
VIT_01s0011g02850.t01	Wine grape	plastid	47.78	44.79
Solyc05g009940.2.1	Tomato	plastid	45.19	42.29
PGSC0003DMT400002108	Potato	plastid	44.07	41.25
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	18.33	36.94
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	21.67	35.89
KXG19937	Sorghum	mitochondrion	35.56	34.41
Zm00001d045938_P005	Maize	mitochondrion, plastid	35.56	34.29
TraesCS7A01G228700.1	Wheat	plastid	35.0	34.05
TraesCS7B01G195000.1	Wheat	plastid	35.0	34.05
TraesCS7D01G229800.1	Wheat	plastid	35.0	34.05
Zm00001d037438_P002	Maize	plastid	34.81	33.51
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	32.41	30.07
Os06t0499000-01	Rice	plastid	16.3	26.04
Bra022589.1-P	Field mustard	plastid	27.41	20.36
Bra009713.1-P	Field mustard	plastid	27.78	16.09
Bra026478.1-P	Field mustard	plastid	26.3	15.94

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra017353	EnsemblPlants:Bra017353.1	EnsemblPlants:Bra017353.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001119	UniProt:M4DLH2	PFAM:PF00395	PFscan:PS51272
PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	InterPro:SLH_dom	TMHMM:TMhelix	UniParc:UPI00025421D7	SEG:seg

Description

AT3G25680 (E=7e-233) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology region (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2048 Blast hits to 1685 proteins in 255 species: Archae - 25; Bacteria - 194; Metazoa - 982; Fungi - 118; Plants - 132; Viruses - 46; Other Eukaryotes - 551 (source: NCBI BLink).

Coordinates

chrA09:-:14508624..14511099

Molecular Weight (calculated)

61028.5 Da

IEP (calculated)

5.380

GRAVY (calculated)

-0.401

Length

540 amino acids

Sequence
(BLAST)

001: MCSLSIRKPP NSSFIFPKFA PLLVRHRFTL PLLKPRSVRV VASLSGASWV SQASKDKYGG WSLIQDDPPL PHSKKWRNVV ITGVGSSLAL LLATLAYFSV
101: SRKGFRFSFS NPLHSSSVDL NQNENEESVE KTSASESDTE GVDYVSDTVD TSSSALKAHP ITTPVSVDAA QQEAIAVLKK LKIIEDDVMG DELCTRREYA
201: RWLVRLNSLL ERNPKHRIVP AVALAGSSVP AFEDVNITDP DFEYIQALAE AGITSSKLSG NDISFHPENF VSRLDLVNWK AELECDLHPE IMQEISRTKV
301: DYIDTKDLNP DMSLGFYLDF LMGDKSTIRN VFGRIKRFQP SRPVTKAQAA AALTTGKMAK AISEELSRLE AESFSQKAEM EEIRSELLEK GEIRQLWDEK
401: LQVERSRGVA MEELYLSRVN ELEQEKVSQL KWFAERLKEK AAIDCQKQLV TSLREDIDEM SQRLTTDESV YMVEHSELQK MLSELQSKLE SVLDKRSILE
501: AEVEALRILR TWVEDEAKAS QARAKVLEEA GRRWKWNDHS

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.