Factsheet for Bra022589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27070	Canola	plastid	96.7	96.83
AT5G52410.2	Thale cress	plastid	73.87	70.56
Zm00001d041148_P001	Maize	cytosol	27.92	56.7
Solyc06g036030.1.1	Tomato	cytosol	9.63	53.03
Solyc06g036040.1.1	Tomato	plastid	19.67	51.62
PGSC0003DMT400076923	Potato	golgi, mitochondrion	29.57	47.25
KRH38456	Soybean	plastid	46.77	38.55
Bra026478.1-P	Field mustard	plastid	46.49	37.93
Bra009713.1-P	Field mustard	plastid	48.14	37.55
PGSC0003DMT400040825	Potato	plastid	47.32	36.48
Solyc03g025530.2.1	Tomato	plastid	46.77	36.06
Zm00001d020493_P001	Maize	cytosol	19.95	35.45
KRH08938	Soybean	plastid	46.77	34.87
TraesCS5D01G563800.1	Wheat	golgi	42.5	34.72
TraesCS7B01G000400.2	Wheat	plastid	43.05	33.69
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	42.64	33.59
VIT_16s0050g00600.t01	Wine grape	plastid	49.66	33.46
GSMUA_Achr11P...	Banana	plastid	44.29	33.44
KRH35286	Soybean	plastid	43.19	33.37
Os03t0862100-01	Rice	plastid	41.82	33.12
TraesCS5B01G572300.1	Wheat	plastid	41.27	33.0
KRG91542	Soybean	plastid	31.36	32.52
HORVU5Hr1G124610.7	Barley	mitochondrion	42.09	32.31
EER93049	Sorghum	plastid	40.99	31.53
Zm00001d034935_P007	Maize	plastid	41.13	29.49
Bra017353.1-P	Field mustard	plastid	20.36	27.41

Protein Annotations

EnsemblPlants:Bra022589.1	EnsemblPlants:Bra022589.1-P	EnsemblPlantsGene:Bra022589	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009536	GO:GO:0009941	InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	PFAM:PF00395	SEG:seg	UniParc:UPI0002546FCF	UniProt:M4E1E1
MapMan:35.2	:	:	:	:	:

Description

AT5G52410 (E=3e-248) | unknown protein

Coordinates

chrA02:-:8679664..8682840

Molecular Weight (calculated)

81219.2 Da

IEP (calculated)

5.621

GRAVY (calculated)

-0.546

Length

727 amino acids

Sequence
(BLAST)

001: MASAMATWTP SSLQLRIALN CRSFKAAPAR AKLTKLSPRL RTSCAAHNAE SGRGSDRFRG WADSGDDEMS PDSGGGDWYK GTLVSGVAAG MVLFVGLALG
101: ARSFKRHVLT RPKVEVMVSE SSSDQVGEAS HERGNLMDQD EKESYKDSPL LESKSASTSK ENHEANKSSE SRADRVDTDA SQIPDEEKKH RCYTGIPAPS
201: TVPQVNPLSP IFPTVVDPIQ SQMFAALQAL KVIESDARPY DLCTRREFAR WLVSASNVLS RNSASKVYPA MYIENVTELA FDDIAPEDPD FPFIQGLAEA
301: GIISSKLSNH NMPSAESGHL KFSPESPLSR QDLLSWKMAL EFRQLPEADS KKLYQLSGFL DIDKINPEAW PALIADLSAG ENGITSVAFG RTRLFQPSKA
401: VTKAQTAASL ATGEACEAVS EELARIQAEA MAENVVSAHN ALVAQVEKEI NATFEKELLR ETETVDAVVK LAEEAKRELT RLRVVKEEET LALEKERTSI
501: ETEMESLARL RNELEEQLQG LVSNKAEMSF EKERFGRLQK QVEKENEEIL RLQSELEVER NALSIARDWA EDEARRATEQ AKVLEEARGR WEKYGLKVIV
601: DRDLHEQTTT ESTWLNAGKQ YSVEGTMNRG ENVVAKLKKM AQDVRERSRD VIYSIVEKIR LLISALEKQV RGVSNKAKQV EMKTKSRAEE LRKQASLKIC
701: EIRDVSMMRT KEVVEEFKDR VWKLKSK

Best Arabidopsis Sequence Match ( AT5G52410.3 )
(BLAST)

001: MASTMATWTP SSLQLRIALN HGIFKAPERA KMTKLSRRLR ISCVAQNAEP GRDSGESNGS DRFRGWADSG DDENNSRGGD WFKGTLLSGV AGMVLFVGLT
101: YAALSSKRNV LRPKVEVMVT TVTKSSIDQI STDENEGNIV TSQDNQESYR DSQVLSPDEI DVASKSTSTR KDNEEAEKAS VSSAERYTSS TELDGVDTHT
201: SQIPNEKQKA RRYTGIPAPS TVPQVDSLKP IFPTVVDPVQ SQMFAALQAL KVIESDALPY DLCTRREFAR WVVSASNTLS RNSASKVYPA MYIENVTELA
301: FDDITPEDPD FPFIQGLAEA GLISSKLSNN NMPSSESSRV TFSPESPLTR QDLLSWKMAL EFRQLPEADS KKLYQLSGFL DIDKINPEAW PALIADLSAG
401: EHGITALSFG RTRLFQPSKA VTKAQTAVSL AIGDAFEVVG EELARIEAEA MAENVVCAHN ELVAQVEKDI NASFEKELLR EKEIVDAVEK LAEEAKSELA
501: RLRVEKEEET LALERERTSI ETEMEALARI RNELEEQLQS LASNKAEMSY EKERFDRLQK QVEDENQEIL RLQNELEVER NALSIARDWA KDEARRAREQ
601: AKVLEEARGR WEKYGLKVIV DSDLHEQTTK TESTWLNAGK QNHVEGTMKR AGNLIAKLKK MAKDVGEKSR EVIYLIIEKI SLLISALKQQ VHGMENKAKD
701: LKIKTKSKAE EVWRQTSLRA DEIRNISIVK AKETVEEFKD RVGKLGEKFK SK

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - /.../ Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G52410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.