Factsheet for Bra026478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16870	Canola	plastid	93.38	91.73
Bra009713.1-P	Field mustard	plastid	73.96	70.71
AT5G23890.1	Thale cress	plastid	69.36	65.33
Zm00001d041148_P001	Maize	cytosol	21.66	53.91
Solyc06g036040.1.1	Tomato	plastid	16.27	52.35
Solyc06g036030.1.1	Tomato	cytosol	7.74	52.27
PGSC0003DMT400076923	Potato	golgi, mitochondrion	25.14	49.23
Bra022589.1-P	Field mustard	plastid	37.93	46.49
KRH38456	Soybean	plastid	42.99	43.42
Solyc03g025530.2.1	Tomato	plastid	45.79	43.27
PGSC0003DMT400040825	Potato	plastid	45.68	43.16
KRH08938	Soybean	plastid	45.34	41.44
KRH35286	Soybean	plastid	41.3	39.11
KRG91542	Soybean	plastid	29.85	37.95
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	38.5	37.16
TraesCS5D01G563800.1	Wheat	golgi	36.25	36.29
TraesCS5B01G572300.1	Wheat	plastid	36.59	35.86
Os03t0862100-01	Rice	plastid	36.81	35.73
GSMUA_Achr11P...	Banana	plastid	38.38	35.51
VIT_16s0050g00600.t01	Wine grape	plastid	42.87	35.4
TraesCS7B01G000400.2	Wheat	plastid	36.48	34.98
Zm00001d020493_P001	Maize	cytosol	15.71	34.23
EER93049	Sorghum	plastid	36.03	33.97
HORVU5Hr1G124610.7	Barley	mitochondrion	36.03	33.9
Zm00001d034935_P007	Maize	plastid	35.91	31.56
Bra017353.1-P	Field mustard	plastid	15.94	26.3

Protein Annotations

EnsemblPlants:Bra026478.1	EnsemblPlants:Bra026478.1-P	EnsemblPlantsGene:Bra026478	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF6	PFscan:PS51272
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002546FB3	UniProt:M4ECG9	MapMan:35.2	:

Description

AT5G23890 (E=4e-272) | LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology region (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 47782 Blast hits to 27307 proteins in 1672 species: Archae - 444; Bacteria - 6951; Metazoa - 22630; Fungi - 3561; Plants - 1682; Viruses - 252; Other Eukaryotes - 12262 (source: NCBI BLink).

Coordinates

chrA01:+:9073214..9077184

Molecular Weight (calculated)

97389.5 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.492

Length

891 amino acids

Sequence
(BLAST)

001: MTSASATWTP TSLQLRLALS SRVRWKPRSV YLQPTRFASK SGLVIVCVSQ RTGSDSSNPP ADGLAGGDDS GNDVSSSTAK KKSFVQGVVG AGVAGIVLVA
101: GLSYAVASFN KRSNNPRVKQ EMQPLTSHQE SVILSSDETP SDEGKVANSE ETNFKEDEIL ESNGIGQQGG EDKILGAEDS SFDGTDATEN ITSQSDPETP
201: ESEKIISEVV DSQSSNLDGA DNPTSEDPYS VPDTETTNVS DLENQANSEK VDSMSSLSDS YATETVALGV LVPSQSDSSS DPHTVPLYDT RTEFSTMTED
301: LSEVNGTPED LAAGSTSSVS DIDTEKETES SKPPVPESTY WSENELNMNS QDELGDRGSP LETLSGGSAY YSAGIPAPSI PFQVNPGNIL VPAAADQVQC
401: QAFSALQVLK VIETDTQPSD LCTRREYARW LVSASSALSR NTTSKVYPAM YIESVTELAF DDITPGDPDF SSIQGLAEAG LITSKLSNRD LFNDIEGTLL
501: FFPESLLSRQ DLISWKMALE KRQLPEADKK INPDAWPAII SDLSSGEQGI AVLAFGYTRL FQPHKPVTKA QAAIALSNGE ASVMVSEELA RIEAESAAEK
601: AVSVHNALVA EVEKDINASF EKELYIEREK IEVIEIMAEQ VKVELDQLRE KREEESLALV KERAAVESEM EVLSRLRREA EEKLEALMRN KAEISFEKEK
701: VSSLRKDVEE ESQRITKLQY ELEVERKALS MARSWAEEEG KRAREQARAL EEARKRWETN GLRVIVDKDL QEDVEQSVLL NTIEPSSVSS TEERAQTLMD
801: KLKEMAESLG GKSREVIFLV MEKIHLWIMV LKEYVESLGK RAGKMREAAI VSAKGAVKEV EKGTAQVGDK VKRVAEECRD GVGKISQRFK T

Best Arabidopsis Sequence Match ( AT5G23890.1 )
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSPAV YLRPSRLARK SGYGIVCVSQ KPEVDAWTGS DSSKSSADNL AGWDDSDNDD KKSSRVKKKS LIEGVVGAGV
101: AGIILFLGLS YAAASFSKRT KKQEMHSLTS QQESMIQSSD EISSDEIKVA NSEESNLKDE DKSIESNDVA QKSDEGSGED KLLGKETSSF DGVMTDEADA
201: TESIPQNTPE ADLMVNAETD PETAESEKII SESKSLLDSS TEPILLDAES SNLVGVENTN SEDPESLLNT EPTNVSDLEN HVNSQKEDSL SSLSGIDAYA
301: ASGTVTELPE VSSQLDSTSK PQIVPLNDTE TAFATAEELS EVNGTPEYFE TSDWSSISDI DTTKELESSK SPVPESTDGS KDELNIYSQD ELDDNRMLLE
401: IPSGGSAFSS AGIPAPFMSV IVNPGKILVP VAADQIQCQA FAALQVLKVI ETDTQPSDLC TRREYARWLI SASSALSRNT TSKVYPAMYI ENVTELAFDD
501: ITPEDPDFSS IQGLAEAGLI ASKLSNRDLL DDVEGTFLFS PESLLSRQDL ISWKMALEKR QLPEADKKML YKLSGFIDID KINPDAWPSI IADLSTGEQG
601: IAALAFGCTR LFQPHKPVTK GQAAIALSSG EASDIVSEEL ARIEAESMAE KAVSAHNALV AEVEKDVNAS FEKELSMERE KIEAVEKMAE LAKVELEQLR
701: EKREEENLAL VKERAAVESE MEVLSRLRRD AEEKLEDLMS NKAEITFEKE RVFNLRKEAE EESQRISKLQ YELEVERKAL SMARSWAEEE AKKAREQGRA
801: LEEARKRWET NGLRVVVDKD LQETSSRETE QSIVLNEMER SSVEETERRA KTLMDKLKEM AGTVSGKSRE VIFTVMEKIR LWITVLKEYA VNLGKRAGEM
901: RDAAIVRAKG AAADVEQGTV QVSDKVKKMA EECRDGVGKI SQRFKT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.