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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d041148_P001 Maize cytosol 30.3 11.17
CDX91640 Canola plastid 54.55 9.92
KRG91542 Soybean plastid 52.27 9.84
AT5G52410.2 Thale cress plastid 56.06 9.72
CDY27070 Canola plastid 53.03 9.64
Bra022589.1-P Field mustard plastid 53.03 9.63
Solyc03g025530.2.1 Tomato plastid 61.36 8.59
KRH38456 Soybean plastid 56.06 8.39
CDX87153 Canola plastid 56.06 8.19
CDY16870 Canola plastid 55.3 8.05
Solyc05g009940.2.1 Tomato plastid 34.09 7.8
KRH35286 Soybean plastid 55.3 7.76
Bra026478.1-P Field mustard plastid 52.27 7.74
Os03t0862100-01 Rice plastid 53.79 7.73
CDX88055 Canola plastid 54.55 7.73
Bra009713.1-P Field mustard plastid 54.55 7.73
TraesCS5D01G563800.1 Wheat golgi 51.52 7.64
AT5G23890.1 Thale cress plastid 54.55 7.61
CDX80394 Canola plastid 53.79 7.61
KRH08938 Soybean plastid 56.06 7.59
GSMUA_Achr5P12350_001 Banana endoplasmic reticulum, plasma membrane, vacuole 53.03 7.58
GSMUA_Achr11P... Banana plastid 54.55 7.48
TraesCS7B01G000400.2 Wheat plastid 52.27 7.43
HORVU5Hr1G124610.7 Barley mitochondrion 53.03 7.39
TraesCS5B01G572300.1 Wheat plastid 50.76 7.37
VIT_16s0050g00600.t01 Wine grape plastid 59.85 7.32
EER93049 Sorghum plastid 52.27 7.3
Zm00001d034935_P007 Maize plastid 51.52 6.71
Zm00001d020493_P001 Maize cytosol 5.3 1.71
Solyc06g036040.1.1 Tomato plastid 1.52 0.72
Protein Annotations
EnsemblPlants:Solyc06g036030.1.1EnsemblPlantsGene:Solyc06g036030.1PANTHER:PTHR33740PANTHER:PTHR33740:SF3UniParc:UPI0002765F41UniProt:K4C4X2
MapMan:35.2:::::
Description
No Description!
Coordinates
chr6:+:25424468..25425166
Molecular Weight (calculated)
15138.6 Da
IEP (calculated)
4.484
GRAVY (calculated)
-0.262
Length
132 amino acids
Sequence
(BLAST)
001: MVIEADVQPG DLCTRREYAR WLVSASTILS RTNASKVYSA MYIENVTELA FDDITLDDPD FPSIQGLAEA GLISSKLSRH DKKSSSYPDQ SPFFFTPERF
101: NTAQNNFSLF YPLFINSASH LMSYEYCYFY YS
Best Arabidopsis Sequence Match ( AT5G52410.1 )
(BLAST)
001: MFAALQALKV IESDALPYDL CTRREFARWV VSASNTLSRN SASKVYPAMY IENVTELAFD DITPEDPDFP FIQGLAEAGL ISSKLSNNNM PSSESSRVTF
101: SPESPLTRQD LLSWKMALEF RQLPEADSKK LYQLSGFLDI DKINPEAWPA LIADLSAGEH GITALSFGRT RLFQPSKAVT KAQTAVSLAI GDAFEVVGEE
201: LARIEAEAMA ENVVCAHNEL VAQVEKDINA SFEKELLREK EIVDAVEKLA EEAKSELARL RVEKEEETLA LERERTSIET EMEALARIRN ELEEQLQSLA
301: SNKAEMSYEK ERFDRLQKQV EDENQEILRL QNELEVERNA LSIARDWAKD EARRAREQAK VLEEARGRWE KYGLKVIVDS DLHEQTTKTE STWLNAGKQN
401: HVEGTMKRAG NLIAKLKKMA KDVGEKSREV IYLIIEKISL LISALKQQVH GMENKAKDLK IKTKSKAEEV WRQTSLRADE IRNISIVKAK ETVEEFKDRV
501: GKLGEKFKSK
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - /.../ Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G52410]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.