Factsheet for VIT_16s0050g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036040.1.1	Tomato	plastid	16.5	64.26
Zm00001d041148_P001	Maize	cytosol	20.95	63.13
Solyc06g036030.1.1	Tomato	cytosol	7.32	59.85
PGSC0003DMT400076923	Potato	golgi, mitochondrion	24.56	58.24
KRH38456	Soybean	plastid	43.47	53.17
CDX91640	Canola	plastid	34.01	50.55
CDY27070	Canola	plastid	33.55	49.86
Bra022589.1-P	Field mustard	plastid	33.46	49.66
PGSC0003DMT400040825	Potato	plastid	43.1	49.31
KRH08938	Soybean	plastid	44.49	49.23
Solyc03g025530.2.1	Tomato	plastid	42.82	48.99
AT5G52410.2	Thale cress	plastid	33.18	47.04
KRG91542	Soybean	plastid	30.21	46.51
KRH35286	Soybean	plastid	39.39	45.16
Bra009713.1-P	Field mustard	plastid	38.28	44.31
CDX88055	Canola	plastid	38.28	44.31
CDX80394	Canola	plastid	38.18	44.16
CDY16870	Canola	plastid	36.79	43.77
AT5G23890.1	Thale cress	plastid	38.28	43.66
CDX87153	Canola	plastid	36.14	43.14
Bra026478.1-P	Field mustard	plastid	35.4	42.87
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	35.77	41.82
GSMUA_Achr11P...	Banana	plastid	36.98	41.43
Os03t0862100-01	Rice	plastid	35.13	41.29
TraesCS5D01G563800.1	Wheat	golgi	34.01	41.24
Zm00001d020493_P001	Maize	cytosol	15.38	40.59
TraesCS5B01G572300.1	Wheat	plastid	33.92	40.26
TraesCS7B01G000400.2	Wheat	plastid	33.73	39.18
HORVU5Hr1G124610.7	Barley	mitochondrion	33.92	38.65
EER93049	Sorghum	plastid	32.72	37.35
Zm00001d034935_P007	Maize	plastid	32.62	34.71
VIT_01s0011g02850.t01	Wine grape	plastid	14.64	27.43

Protein Annotations

EntrezGene:100264485	wikigene:100264485	MapMan:35.2	ProteinID:CCB47867	ProteinID:CCB47867.1	ncoils:Coil
UniProt:F6H6M7	EMBL:FN595243	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001119
EntrezGene:LOC100264485	wikigene:LOC100264485	PFscan:PS51272	PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	InterPro:SLH_dom
TIGR:TC52285	TMHMM:TMhelix	UniParc:UPI0002108157	ArrayExpress:VIT_16s0050g00600	EnsemblPlantsGene:VIT_16s0050g00600	EnsemblPlants:VIT_16s0050g00600.t01
unigene:Vvi.4099	RefSeq:XP_002271744	RefSeq:XP_002271744.1	RefSeq:XP_002271744.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:17566780..17576201

Molecular Weight (calculated)

119606.0 Da

IEP (calculated)

4.401

GRAVY (calculated)

-0.553

Length

1079 amino acids

Sequence
(BLAST)

0001: MASVTTNWSP SSFQLRFSFQ CRRSPAVFVR THVRKLDRQV RVLSIAGDGN GVGRHRDGNS WISSESKGDD LSGWSGSDGS EQYGKSQKKR WPGGMVGAGV
0101: AGVVLVAGLS FAAFSLSKQN PSRPEKQMEA MTIQMEQGIL QEDYSLESKT GTDAMPTPSI QEDMSGESPF DDTLVAGDSM SSLPGFCESD ILIDPIDTLS
0201: FNYSDASLAV GSSESSQLEE NGDALKLVNS SIHDADTTNL NSDDQGELLG SKGTENSNFS LESSSSSFPR TVDEDHYVHS DKMLNEWKSI PNKSFVDANG
0301: TQHPVSEKEY LDLDELQKDI PNESYVKLHD LNASGIQDPV SDGEYLDPDE LQKDITNKSY VKLRDLNASG IQDPVSDKEH LDLEELQDIP NKSYEKLHDL
0401: NADKEYLDME ELEKDIPNKS YVKLCDLNAS GIQHSAPDGE YLDLDELQKD IPNKSYVKLH DLNADREYLD LEELEKDIPN KSYVKLHDLN ASGSTSSTSA
0501: LPYPFDYDQD VNLQNKIQRN RSFLESPIAE NSFSSAGIPA PSAVSESLKV LPGQVVVPAV VDQVQGQALA ALQVLKVIEP DVQPSDLCTR REFARWLVSA
0601: SSVLSRNTVS KVYPAMYIGN ITELAFDDIT PEDPDFSSIQ GLAEAGLISS KLSRRDLLSF SDEEDQSPFY FSPDSPLSRQ DLVSWKMALE KRQLPETDKK
0701: VLYQVSGFID IDSINPDAWP ALVADASAGE QGIIALAFGY TRLFQPNKPV TKAQAAIALA TGESSDIVSE ELARIEAEAM AEKAVAEHSA LVDQVEKELN
0801: ASFEKELSLE RKKIDAMEKL AEEARQELEK LRAERDEDNI SLIKERAAIE SEMEVLSRLR SEVEEQLQSF MSNKVEISYE KERISKLRKE AESENQEIAR
0901: LQYELEVERK ALSMARAWAE DEAKRAREQA KALEEARDRW EKHGIKVVVD NELREEASAE VTWLDTAKQF SVDGTVSRAE NLVDKLNAMG SDLRGKSKDV
1001: IDNIVQKIIH LISILRELAS KVGTQVRELK DAAVVKAGGS IQELQQNTAE FSLAIKEGTK RVVGDCRGGV EKLTQKFKT

Best Arabidopsis Sequence Match ( AT5G23890.2 )
(BLAST)

001: MHSLTSQQES MIQSSDEISS DEIKVANSEE SNLKDEDKSI ESNDVAQKSD EGSGEDKLLG KETSSFDGVM TDEADATESI PQNTPEADLM VNAETDPETA
101: ESEKIISESK SLLDSSTEPI LLDAESSNLV GVENTNSEDP ESLLNTEPTN VSDLENHVNS QKEDSLSSLS GIDAYAASGT VTELPEVSSQ LDSTSKPQIV
201: PLNDTETAFA TAEELSEVNG TPEYFETSDW SSISDIDTTK ELESSKSPVP ESTDGSKDEL NIYSQDELDD NRMLLEIPSG GSAFSSAGIP APFMSVIVNP
301: GKILVPVAAD QIQCQAFAAL QVLKVIETDT QPSDLCTRRE YARWLISASS ALSRNTTSKV YPAMYIENVT ELAFDDITPE DPDFSSIQGL AEAGLIASKL
401: SNRDLLDDVE GTFLFSPESL LSRQDLISWK MALEKRQLPE ADKKMLYKLS GFIDIDKINP DAWPSIIADL STGEQGIAAL AFGCTRLFQP HKPVTKGQAA
501: IALSSGEASD IVSEELARIE AESMAEKAVS AHNALVAEVE KDVNASFEKE LSMEREKIEA VEKMAELAKV ELEQLREKRE EENLALVKER AAVESEMEVL
601: SRLRRDAEEK LEDLMSNKAE ITFEKERVFN LRKEAEEESQ RISKLQYELE VERKALSMAR SWAEEEAKKA REQGRALEEA RKRWETNGLR VVVDKDLQET
701: SSRETEQSIV LNEMERSSVE ETERRAKTLM DKLKEMAGTV SGKSREVIFT VMEKIRLWIT VLKEYAVNLG KRAGEMRDAA IVRAKGAAAD VEQGTVQVSD
801: KVKKMAEECR DGVGKISQRF KT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.