Factsheet for PGSC0003DMT400076923

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036040.1.1	Tomato	plastid	51.43	84.48
Zm00001d041148_P001	Maize	cytosol	40.88	51.96
Zm00001d020493_P001	Maize	cytosol	32.75	36.43
CDX91640	Canola	plastid	48.79	30.58
PGSC0003DMT400040825	Potato	plastid	63.3	30.54
CDY27070	Canola	plastid	47.91	30.03
Bra022589.1-P	Field mustard	plastid	47.25	29.57
AT5G52410.2	Thale cress	plastid	49.45	29.57
KRH38456	Soybean	plastid	55.82	28.8
KRH08938	Soybean	plastid	55.6	25.95
CDY16870	Canola	plastid	51.43	25.8
CDX87153	Canola	plastid	50.77	25.55
CDX88055	Canola	plastid	52.09	25.43
Bra009713.1-P	Field mustard	plastid	52.09	25.43
AT5G23890.1	Thale cress	plastid	52.53	25.26
Bra026478.1-P	Field mustard	plastid	49.23	25.14
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	50.99	25.14
CDX80394	Canola	plastid	51.21	24.97
TraesCS5D01G563800.1	Wheat	golgi	48.57	24.83
VIT_16s0050g00600.t01	Wine grape	plastid	58.24	24.56
KRH35286	Soybean	plastid	50.11	24.23
KRG91542	Soybean	plastid	37.14	24.11
TraesCS5B01G572300.1	Wheat	plastid	47.69	23.87
HORVU5Hr1G124610.7	Barley	mitochondrion	49.23	23.65
TraesCS7B01G000400.2	Wheat	plastid	48.13	23.57
GSMUA_Achr11P...	Banana	plastid	49.67	23.47
Os03t0862100-01	Rice	plastid	47.03	23.31
EER93049	Sorghum	plastid	47.25	22.75
Zm00001d034935_P007	Maize	plastid	47.25	21.2
PGSC0003DMT400002108	Potato	plastid	21.54	16.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400076923	EnsemblPlantsGene:PGSC0003DMG402029918	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	PGSC:PGSC0003DMG402029918
SEG:seg	UniParc:UPI0002962C64	UniProt:M1CXL4	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402029918]

Coordinates

chr6:+:37426300..37429951

Molecular Weight (calculated)

51846.1 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.467

Length

455 amino acids

Sequence
(BLAST)

001: MPQRFTLQCT LRMLLNLPSM ILRLMIQTSL PYKVELQNHR FSSQNSAFTS VKYFEVAVCE CQLFPGLAEA GLISSKLSRH DKKSSSYPDQ SPFFFTPESP
101: LSRQDLVSWK MALEKRQLPV VDQKSLQKVS GWIDTDKIHP DAWPALVADL SSGERGIIAL AFGYTRLFQP YKPVTKGQAV IALATGEASD TIVEVLSRIE
201: AESIAEKAVA SYNSLAAQVE KDVNASFEKE FILEKKRVDT IKKLAEEARQ ELESLRAERK AEHLVVMKER AAVDSELEVL SRFRHEVEEQ LQSLKSDKID
301: ISYEKERLGK LHRDAEIENQ EIARLQYELE VERKALSIAR AWAEGEAKRA RERAKTLEAA KNRWERQGIN KVIVDNDIQE DLNIDVTWLS AGNQSVEESL
401: NRTESLMDKL KEMADTVRAK SKETIHKIME KILFVISVLK EWAQKSRHTN GRAKG

Best Arabidopsis Sequence Match ( AT5G23890.2 )
(BLAST)

001: MHSLTSQQES MIQSSDEISS DEIKVANSEE SNLKDEDKSI ESNDVAQKSD EGSGEDKLLG KETSSFDGVM TDEADATESI PQNTPEADLM VNAETDPETA
101: ESEKIISESK SLLDSSTEPI LLDAESSNLV GVENTNSEDP ESLLNTEPTN VSDLENHVNS QKEDSLSSLS GIDAYAASGT VTELPEVSSQ LDSTSKPQIV
201: PLNDTETAFA TAEELSEVNG TPEYFETSDW SSISDIDTTK ELESSKSPVP ESTDGSKDEL NIYSQDELDD NRMLLEIPSG GSAFSSAGIP APFMSVIVNP
301: GKILVPVAAD QIQCQAFAAL QVLKVIETDT QPSDLCTRRE YARWLISASS ALSRNTTSKV YPAMYIENVT ELAFDDITPE DPDFSSIQGL AEAGLIASKL
401: SNRDLLDDVE GTFLFSPESL LSRQDLISWK MALEKRQLPE ADKKMLYKLS GFIDIDKINP DAWPSIIADL STGEQGIAAL AFGCTRLFQP HKPVTKGQAA
501: IALSSGEASD IVSEELARIE AESMAEKAVS AHNALVAEVE KDVNASFEKE LSMEREKIEA VEKMAELAKV ELEQLREKRE EENLALVKER AAVESEMEVL
601: SRLRRDAEEK LEDLMSNKAE ITFEKERVFN LRKEAEEESQ RISKLQYELE VERKALSMAR SWAEEEAKKA REQGRALEEA RKRWETNGLR VVVDKDLQET
701: SSRETEQSIV LNEMERSSVE ETERRAKTLM DKLKEMAGTV SGKSREVIFT VMEKIRLWIT VLKEYAVNLG KRAGEMRDAA IVRAKGAAAD VEQGTVQVSD
801: KVKKMAEECR DGVGKISQRF KT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.