Factsheet for TraesCS5D01G563800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G000400.2	Wheat	plastid	88.43	84.71
Zm00001d041148_P001	Maize	cytosol	32.36	80.45
HORVU5Hr1G124610.7	Barley	mitochondrion	73.03	68.64
Os03t0862100-01	Rice	plastid	61.35	59.48
EER93049	Sorghum	plastid	60.11	56.61
Solyc06g036040.1.1	Tomato	plastid	17.19	55.23
Solyc06g036030.1.1	Tomato	cytosol	7.64	51.52
Zm00001d034935_P007	Maize	plastid	58.31	51.18
Zm00001d020493_P001	Maize	cytosol	23.26	50.61
PGSC0003DMT400076923	Potato	golgi, mitochondrion	24.83	48.57
CDY27070	Canola	plastid	35.06	42.98
Bra022589.1-P	Field mustard	plastid	34.72	42.5
CDX91640	Canola	plastid	34.49	42.29
AT5G52410.2	Thale cress	plastid	35.62	41.66
KRH38456	Soybean	plastid	41.01	41.38
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	42.02	40.52
GSMUA_Achr11P...	Banana	plastid	41.8	38.63
Solyc03g025530.2.1	Tomato	plastid	40.56	38.28
PGSC0003DMT400040825	Potato	plastid	40.45	38.18
CDX87153	Canola	plastid	38.43	37.83
KRH08938	Soybean	plastid	41.12	37.54
CDY16870	Canola	plastid	37.75	37.05
Bra009713.1-P	Field mustard	plastid	38.31	36.59
CDX88055	Canola	plastid	38.31	36.59
KRG91542	Soybean	plastid	28.65	36.38
CDX80394	Canola	plastid	38.09	36.33
Bra026478.1-P	Field mustard	plastid	36.29	36.25
AT5G23890.1	Thale cress	plastid	37.98	35.73
KRH35286	Soybean	plastid	37.53	35.49
VIT_16s0050g00600.t01	Wine grape	plastid	41.24	34.01
TraesCS7D01G229800.1	Wheat	plastid	17.64	28.29

Protein Annotations

EnsemblPlants:TraesCS5D01G563800.1	EnsemblPlantsGene:TraesCS5D01G563800	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:562648050..562652469

Molecular Weight (calculated)

96354.7 Da

IEP (calculated)

4.319

GRAVY (calculated)

-0.489

Length

890 amino acids

Sequence
(BLAST)

001: MASSLAAPSS APAPACCSLQ LHLLRRPALV LFPSYSRARP HLRLRAQPSP EPEAGDSFAG WSDKQEDNKD AAADSDSDSG GGALGGLVGP ALAGLLFLAG
101: ITFAAISIRG SKAPLPTHTE TTADTTPDQQ QQDDNDAAAA QALSPADDTL DATSDTTPLP NNLQTDDKIP EEAAQHDDMD NHQLDLDRSS SHLDPTTDKY
201: IASQDDTPVT DSPQSLVPAY DPTSEEATPD PQEALLLDSE PNLPENQDTT FTSDIMVLES GDVVQISDAA IEAASHTYVQ DTEQSPDKLS TQDGLSASTF
301: PDYVAYGSTD QMLPSGSNDL PTQDANPAKA IQDPASDQDQ AQNAKPFSSG IGIPAPSLLS AALQVPAGQI VVPAAVDPTQ GNALAALQVL KVIEPDARAG
401: DLCTRREYAR WLVVASNSLS RNTYSKVYPA MYIENVSELA FDDVTTEDPD FPFIQGLAEA GLISSKLSRS DMEVAENVEN NHYFFSADSP LSRQDLVSWK
501: MALDKRQLPE VDKNSLYKTS GYIDIDKIDT AAWPALVADL GAGDQSITAL AFGFTRLFQP DKPVTKGQAA LALSTGDYAE VVMEELARIE AEKIAEAAVN
601: AHGALVAEVE KQINASFDRE LTREKEKIET LEKLAEEARA ELDKLRAERE EEKNALLRGR ATVESEIQVL SKLRCEVEEQ LQNVLSKKVE INFEKNRIEK
701: LQKEIENENQ AAVQLQYELE VERKALSMAR AWAEDEAKKA REHARALEEA RNQWERQGIK VVVEAGLEED ASAGVTWANA GKEHPVDEAI NRAESLLEKL
801: KSFGGEMKVR SSHALERVMQ YVRSLISSLK ERAAEARQGC ADLGAAAASK AKNVSSEAKA FGSSVADRSK KVVEECKDGL EKFVHRFKTD

Best Arabidopsis Sequence Match ( AT5G23890.2 )
(BLAST)

001: MHSLTSQQES MIQSSDEISS DEIKVANSEE SNLKDEDKSI ESNDVAQKSD EGSGEDKLLG KETSSFDGVM TDEADATESI PQNTPEADLM VNAETDPETA
101: ESEKIISESK SLLDSSTEPI LLDAESSNLV GVENTNSEDP ESLLNTEPTN VSDLENHVNS QKEDSLSSLS GIDAYAASGT VTELPEVSSQ LDSTSKPQIV
201: PLNDTETAFA TAEELSEVNG TPEYFETSDW SSISDIDTTK ELESSKSPVP ESTDGSKDEL NIYSQDELDD NRMLLEIPSG GSAFSSAGIP APFMSVIVNP
301: GKILVPVAAD QIQCQAFAAL QVLKVIETDT QPSDLCTRRE YARWLISASS ALSRNTTSKV YPAMYIENVT ELAFDDITPE DPDFSSIQGL AEAGLIASKL
401: SNRDLLDDVE GTFLFSPESL LSRQDLISWK MALEKRQLPE ADKKMLYKLS GFIDIDKINP DAWPSIIADL STGEQGIAAL AFGCTRLFQP HKPVTKGQAA
501: IALSSGEASD IVSEELARIE AESMAEKAVS AHNALVAEVE KDVNASFEKE LSMEREKIEA VEKMAELAKV ELEQLREKRE EENLALVKER AAVESEMEVL
601: SRLRRDAEEK LEDLMSNKAE ITFEKERVFN LRKEAEEESQ RISKLQYELE VERKALSMAR SWAEEEAKKA REQGRALEEA RKRWETNGLR VVVDKDLQET
701: SSRETEQSIV LNEMERSSVE ETERRAKTLM DKLKEMAGTV SGKSREVIFT VMEKIRLWIT VLKEYAVNLG KRAGEMRDAA IVRAKGAAAD VEQGTVQVSD
801: KVKKMAEECR DGVGKISQRF KT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.