Factsheet for Solyc06g036040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076923	Potato	golgi, mitochondrion	84.48	51.43
Zm00001d041148_P001	Maize	cytosol	48.38	37.43
Zm00001d020493_P001	Maize	cytosol	41.16	27.87
CDX91640	Canola	plastid	52.71	20.11
CDY27070	Canola	plastid	51.99	19.83
Bra022589.1-P	Field mustard	plastid	51.62	19.67
AT5G52410.2	Thale cress	plastid	52.35	19.05
Solyc03g025530.2.1	Tomato	plastid	63.54	18.66
KRH38456	Soybean	plastid	58.84	18.48
TraesCS5D01G563800.1	Wheat	golgi	55.23	17.19
KRH08938	Soybean	plastid	59.57	16.92
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	56.32	16.9
TraesCS5B01G572300.1	Wheat	plastid	54.51	16.61
Os03t0862100-01	Rice	plastid	54.87	16.56
VIT_16s0050g00600.t01	Wine grape	plastid	64.26	16.5
Bra009713.1-P	Field mustard	plastid	55.23	16.42
TraesCS7B01G000400.2	Wheat	plastid	54.87	16.36
CDX88055	Canola	plastid	54.87	16.31
Bra026478.1-P	Field mustard	plastid	52.35	16.27
HORVU5Hr1G124610.7	Barley	mitochondrion	55.23	16.16
CDY16870	Canola	plastid	52.71	16.1
AT5G23890.1	Thale cress	plastid	54.87	16.07
CDX80394	Canola	plastid	53.79	15.97
CDX87153	Canola	plastid	51.99	15.93
EER93049	Sorghum	plastid	53.43	15.66
GSMUA_Achr11P...	Banana	plastid	53.43	15.37
KRH35286	Soybean	plastid	51.62	15.2
Zm00001d034935_P007	Maize	plastid	53.79	14.69
KRG91542	Soybean	plastid	36.1	14.27
Solyc05g009940.2.1	Tomato	plastid	20.58	9.88
Solyc06g036030.1.1	Tomato	cytosol	0.72	1.52

Protein Annotations

EnsemblPlants:Solyc06g036040.1.1	EnsemblPlantsGene:Solyc06g036040.1	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	SEG:seg
UniParc:UPI0002765F42	UniProt:K4C4X3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:+:25427289..25428953

Molecular Weight (calculated)

31982.2 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.646

Length

277 amino acids

Sequence
(BLAST)

001: MALEKRQLPV VDQKVAYKSI RNVGFTRLFQ PYKTVTKGQA AIALATGEAS DTIVEELSRI EAESIAEKAV ASYNSLEAQV EKDVNASFEK ELISEKKRVD
101: IMKKLAEEAR QELESLRAER KAEHLVIMKE RAAVDSELEV LSRFRHEVEE QLQSFKSDKI DISYKKERLG KFHRDAEMEN QEIARLQYEL EVERKAISMA
201: RAWAEGEAKR ARERAKTLEA TRHRWQRQGI NKVVVVNVQE DLNVDVTWLS AGNQLVEESV NRTESLMDKL KRKWPIL

Best Arabidopsis Sequence Match ( AT5G23890.2 )
(BLAST)

001: MHSLTSQQES MIQSSDEISS DEIKVANSEE SNLKDEDKSI ESNDVAQKSD EGSGEDKLLG KETSSFDGVM TDEADATESI PQNTPEADLM VNAETDPETA
101: ESEKIISESK SLLDSSTEPI LLDAESSNLV GVENTNSEDP ESLLNTEPTN VSDLENHVNS QKEDSLSSLS GIDAYAASGT VTELPEVSSQ LDSTSKPQIV
201: PLNDTETAFA TAEELSEVNG TPEYFETSDW SSISDIDTTK ELESSKSPVP ESTDGSKDEL NIYSQDELDD NRMLLEIPSG GSAFSSAGIP APFMSVIVNP
301: GKILVPVAAD QIQCQAFAAL QVLKVIETDT QPSDLCTRRE YARWLISASS ALSRNTTSKV YPAMYIENVT ELAFDDITPE DPDFSSIQGL AEAGLIASKL
401: SNRDLLDDVE GTFLFSPESL LSRQDLISWK MALEKRQLPE ADKKMLYKLS GFIDIDKINP DAWPSIIADL STGEQGIAAL AFGCTRLFQP HKPVTKGQAA
501: IALSSGEASD IVSEELARIE AESMAEKAVS AHNALVAEVE KDVNASFEKE LSMEREKIEA VEKMAELAKV ELEQLREKRE EENLALVKER AAVESEMEVL
601: SRLRRDAEEK LEDLMSNKAE ITFEKERVFN LRKEAEEESQ RISKLQYELE VERKALSMAR SWAEEEAKKA REQGRALEEA RKRWETNGLR VVVDKDLQET
701: SSRETEQSIV LNEMERSSVE ETERRAKTLM DKLKEMAGTV SGKSREVIFT VMEKIRLWIT VLKEYAVNLG KRAGEMRDAA IVRAKGAAAD VEQGTVQVSD
801: KVKKMAEECR DGVGKISQRF KT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.