CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88055	Canola	plastid	90.68	90.77
CDY16870	Canola	plastid	72.67	74.75
CDX87153	Canola	plastid	69.99	72.23
AT5G23890.1	Thale cress	plastid	70.31	69.34
Zm00001d041148_P001	Maize	cytosol	21.97	57.26
Solyc06g036040.1.1	Tomato	plastid	15.97	53.79
Solyc06g036030.1.1	Tomato	cytosol	7.61	53.79
PGSC0003DMT400076923	Potato	golgi, mitochondrion	24.97	51.21
CDX91640	Canola	plastid	38.48	49.45
CDY27070	Canola	plastid	38.37	49.31
KRH38456	Soybean	plastid	43.3	45.8
PGSC0003DMT400040825	Potato	plastid	44.8	44.33
Solyc03g025530.2.1	Tomato	plastid	44.59	44.11
KRH08938	Soybean	plastid	44.91	42.97
KRH35286	Soybean	plastid	41.59	41.23
KRG91542	Soybean	plastid	30.65	40.8
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	38.05	38.46
GSMUA_Achr11P...	Banana	plastid	39.55	38.32
VIT_16s0050g00600.t01	Wine grape	plastid	44.16	38.18
TraesCS5D01G563800.1	Wheat	golgi	36.33	38.09
Zm00001d020493_P001	Maize	cytosol	16.61	37.9
Os03t0862100-01	Rice	plastid	36.55	37.15
TraesCS5B01G572300.1	Wheat	plastid	35.58	36.52
TraesCS7B01G000400.2	Wheat	plastid	36.23	36.38
EER93049	Sorghum	plastid	36.23	35.77
HORVU5Hr1G124610.7	Barley	mitochondrion	36.12	35.59
Zm00001d034935_P007	Maize	plastid	36.33	33.43
CDY04174	Canola	plastid	16.08	27.78
CDY59871	Canola	plastid	15.97	27.34

Protein Annotations

EnsemblPlants:CDX80394	EnsemblPlantsGene:GSBRNA2T00133460001	GO:A0A078CWI1	InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF6	PFscan:PS51272	ProteinID:CDX80394	ProteinID:CDX80394.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EB2267	MapMan:35.2	:	:	:

Description

BnaC07g30500D

Coordinates

chrLK031821:+:203439..207641

Molecular Weight (calculated)

101296.0 Da

IEP (calculated)

4.328

GRAVY (calculated)

-0.490

Length

933 amino acids

Sequence
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKPNAV CLRPSRIGRK SVCGVVCCVS QKPEVEAWTG SDSSNPPADG LAGWADSGNG NGNGNGNGNK SSRAKKKSLI
101: EGVVGAGVAG IVLFAGLSFA VASFNKRNHS RLKPEMQPLT SQQESVLISP SDEAKVADSE ENSLKDEVES IENSDIGPQG DEASGEDKLL GTEDSSFDGI
201: VSDGTDATEN FTSETTPEAE LKLHVQSDPD MPESEKIISE SESIDSQKSG ITGAENPEEP DSLPDTEPTN VSDLDNQADS QKESIDLDSA TETVAVGVLV
301: ASQSDSTSDP HTVPLNATGS AFSTVTEDLP EVNGTPEDLA AESMSSISDV DTAKEVESSE TPVSESTYLS KNELSVDSEV ELTDNGLLET SSGGSAFSSA
401: GIPAPSVSFQ VNPGKILVPA AADQVQCQAF AALQVLKVIE TDTKPSDLCT RREYARWLVS ASSALSRNTT SKVYPAMHIE NVTELAFDDI TPEDPDFSSI
501: QGLAEAGLIT SKLSNRDLLN DVEGTFLFSP ESLLSRQDLI SWKMALEKRQ LPEADKKMLY DLSGFIDIEK INPDAWPAII ADLSTGEQGI AALAFGCTRL
601: FQPHKPVTKA QAAIALSNGE ASDIVIEELA RIEAESMAEK AVSAHNALVA EVEKDVNASF EKELSMEREK IEAVEKMAEQ VKLELEQLRE KREEENLVLV
701: KERAAVESEM EVLSRLRREA EEKLEDLMSN KAEISFEKEK VSSLRKEAEE ESQRISKLQY ELEVERKALS MARSWAEEEG KRAREQARAL EEARKRWETN
801: GLRVIVDKDL QENVETEQSV LLNTVERSSI EGTEERAQTL MNKLTEMAES VGKKSREVIS MVMEKIRLWI TVLKEYAENL GKRAGEMREA AVVKAKGAAK
901: EVEKGTVQVG DKVKRMAEEC RDGVGKITQR FKT

Best Arabidopsis Sequence Match ( AT5G23890.1 )
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSPAV YLRPSRLARK SGYGIVCVSQ KPEVDAWTGS DSSKSSADNL AGWDDSDNDD KKSSRVKKKS LIEGVVGAGV
101: AGIILFLGLS YAAASFSKRT KKQEMHSLTS QQESMIQSSD EISSDEIKVA NSEESNLKDE DKSIESNDVA QKSDEGSGED KLLGKETSSF DGVMTDEADA
201: TESIPQNTPE ADLMVNAETD PETAESEKII SESKSLLDSS TEPILLDAES SNLVGVENTN SEDPESLLNT EPTNVSDLEN HVNSQKEDSL SSLSGIDAYA
301: ASGTVTELPE VSSQLDSTSK PQIVPLNDTE TAFATAEELS EVNGTPEYFE TSDWSSISDI DTTKELESSK SPVPESTDGS KDELNIYSQD ELDDNRMLLE
401: IPSGGSAFSS AGIPAPFMSV IVNPGKILVP VAADQIQCQA FAALQVLKVI ETDTQPSDLC TRREYARWLI SASSALSRNT TSKVYPAMYI ENVTELAFDD
501: ITPEDPDFSS IQGLAEAGLI ASKLSNRDLL DDVEGTFLFS PESLLSRQDL ISWKMALEKR QLPEADKKML YKLSGFIDID KINPDAWPSI IADLSTGEQG
601: IAALAFGCTR LFQPHKPVTK GQAAIALSSG EASDIVSEEL ARIEAESMAE KAVSAHNALV AEVEKDVNAS FEKELSMERE KIEAVEKMAE LAKVELEQLR
701: EKREEENLAL VKERAAVESE MEVLSRLRRD AEEKLEDLMS NKAEITFEKE RVFNLRKEAE EESQRISKLQ YELEVERKAL SMARSWAEEE AKKAREQGRA
801: LEEARKRWET NGLRVVVDKD LQETSSRETE QSIVLNEMER SSVEETERRA KTLMDKLKEM AGTVSGKSRE VIFTVMEKIR LWITVLKEYA VNLGKRAGEM
901: RDAAIVRAKG AAADVEQGTV QVSDKVKKMA EECRDGVGKI SQRFKT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.