CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04174	Canola	plastid	93.39	94.26
AT3G25680.1	Thale cress	plastid	75.23	73.48
KRH70626	Soybean	plastid	45.69	46.46
KRH75517	Soybean	plastid	44.77	45.61
VIT_01s0011g02850.t01	Wine grape	plastid	47.52	44.97
Solyc05g009940.2.1	Tomato	plastid	44.95	42.46
PGSC0003DMT400002108	Potato	plastid	44.04	41.59
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	18.53	37.69
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	21.47	35.89
KXG19937	Sorghum	mitochondrion	35.41	34.59
Zm00001d045938_P005	Maize	mitochondrion, plastid	35.23	34.29
TraesCS7A01G228700.1	Wheat	plastid	34.5	33.87
TraesCS7B01G195000.1	Wheat	plastid	34.5	33.87
TraesCS7D01G229800.1	Wheat	plastid	34.5	33.87
Zm00001d037438_P002	Maize	plastid	34.5	33.51
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	32.11	30.07
Os06t0499000-01	Rice	plastid	15.96	25.74
CDY27070	Canola	plastid	26.79	20.11
CDX91640	Canola	plastid	26.79	20.11
CDX87153	Canola	plastid	26.97	16.26
CDY16870	Canola	plastid	26.79	16.1
CDX80394	Canola	plastid	27.34	15.97
CDX88055	Canola	plastid	26.61	15.56

Protein Annotations

EnsemblPlants:CDY59871	EnsemblPlantsGene:GSBRNA2T00027810001	GO:A0A078J881	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	PFAM:PF00395
PFscan:PS51272	ProteinID:CDY59871	ProteinID:CDY59871.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB845
UniProt:A0A078J881	MapMan:35.2	:	:	:	:

Description

BnaC09g52590DBnaC09g52590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J881]

Coordinates

chrLK033814:-:31679..34395

Molecular Weight (calculated)

61825.6 Da

IEP (calculated)

5.500

GRAVY (calculated)

-0.387

Length

545 amino acids

Sequence
(BLAST)

001: MCSLSIRKPP NSSFIFPKFA PLLVRHRFTL PLLKPRSVRV VASLSGASWV SQASKDKYGG WSLIQDDPPL PHSKSTKKWR NVVITGVGSS LALLLATLAY
101: FSVSRKGFRF CFSNPLHCSS VDLNQNENET EESVQKTSAS ESVTEGVDYV SDTVDTSSST VKAHRITTPV SVDAAQQEAI TVLKKLKIIE DDVVADELCT
201: RREYARWLVR LTSLLERNPK HRIVPAVALA GSSVPAFEDV NITDPDFEYI QALAEAGITS SKLSGNDISF HPENFVSRLD LVNWKAELEC DLHPEIMQEI
301: SRTKVDYIDT KDLNPDMSLG FYLDFLMGDK STIRNVFGRI KRFQPSRPVT KAQAAVALTT GKMAKAISEE LSRLEAESFS QKAEMEEIRS ELLEKGEIRQ
401: LWDEKLQVER FRGVEMEELY LSRVDELEQE KVSQLKWFAE RLKEKAAIDC QKQLVTSLRE DIDEMSQRLT TDESVYMVEH SELQKMLSEL QSKLETVLDK
501: RSILEAEVEA LRILRTWVED EAKASQARAK VLEEAGRRWK WNDHS

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.