Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 5
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017353.1-P | Field mustard | plastid | 35.89 | 21.67 |
| CDY04174 | Canola | plastid | 35.89 | 21.67 |
| VIT_01s0011g02850.t01 | Wine grape | plastid | 38.04 | 21.53 |
| CDY59871 | Canola | plastid | 35.89 | 21.47 |
| KRH75517 | Soybean | plastid | 34.66 | 21.12 |
| KRH70626 | Soybean | plastid | 33.44 | 20.34 |
| AT3G25680.1 | Thale cress | plastid | 33.74 | 19.71 |
| PGSC0003DMT400002108 | Potato | plastid | 34.05 | 19.24 |
| Solyc05g009940.2.1 | Tomato | plastid | 33.74 | 19.06 |
| GSMUA_Achr11P... | Banana | plastid | 29.45 | 9.97 |
| GSMUA_Achr5P12350_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 27.3 | 9.64 |
| GSMUA_Achr2P07080_001 | Banana | endoplasmic reticulum | 4.29 | 5.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P07070_001 | EnsemblPlants:GSMUA_Achr2T07070_001 | EnsemblPlantsGene:GSMUA_Achr2G07070_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33740 | PANTHER:PTHR33740:SF1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294C7D9 | UniProt:M0S5U8 |
| MapMan:35.2 | : | : | : | : | : |
Description
oxidoreductase/ transition metal ion binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G07070_001]
Coordinates
chr2:+:11691266..11695682
Molecular Weight (calculated)
35887.8 Da
IEP (calculated)
4.972
GRAVY (calculated)
-0.067
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYFFLIALV AARSRLHLAG IVASAAILLA ALAYYRSAKR GFKFCFTVPF HTIYKNLMPV GSEKDPDNDI TSTIFEVDQV SEINMDEETK SKENDSADSG
101: ARKQIIVPVA ADTTQQEAVS VLKKLKIIEN DVSTDGLCTR REYARWFVKA NSMLERNPKH KILPKISAAG PFVTAFDDVN LDDPDFCCIQ SLAEAGIVLS
201: KLSALNSSSI SDKGASGDSE KIYFYPESYI SRFDLLNWKA LLEYLFSSEL DEKMLRTKGN FLDLSASSGA SPQLLLDLMA GDNSITRRAF VVAGNSQPDA
301: GDACKVEYDQ LIKVGFRGIG FSPMFA
101: ARKQIIVPVA ADTTQQEAVS VLKKLKIIEN DVSTDGLCTR REYARWFVKA NSMLERNPKH KILPKISAAG PFVTAFDDVN LDDPDFCCIQ SLAEAGIVLS
201: KLSALNSSSI SDKGASGDSE KIYFYPESYI SRFDLLNWKA LLEYLFSSEL DEKMLRTKGN FLDLSASSGA SPQLLLDLMA GDNSITRRAF VVAGNSQPDA
301: GDACKVEYDQ LIKVGFRGIG FSPMFA
001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
Arabidopsis Description
SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.