CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
endoplasmic reticulum 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70626	Soybean	plastid	88.6	88.43
VIT_01s0011g02850.t01	Wine grape	plastid	51.78	48.09
PGSC0003DMT400002108	Potato	plastid	48.41	44.89
Bra017353.1-P	Field mustard	plastid	45.23	44.81
CDY04174	Canola	plastid	45.23	44.81
AT3G25680.1	Thale cress	plastid	46.73	44.8
CDY59871	Canola	plastid	45.61	44.77
Solyc05g009940.2.1	Tomato	plastid	47.85	44.37
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	20.37	40.67
TraesCS7D01G229800.1	Wheat	plastid	37.38	36.04
TraesCS7A01G228700.1	Wheat	plastid	36.82	35.5
TraesCS7B01G195000.1	Wheat	plastid	36.64	35.32
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	21.12	34.66
KXG19937	Sorghum	mitochondrion	35.14	33.69
Zm00001d045938_P005	Maize	mitochondrion, plastid	35.14	33.57
Zm00001d037438_P002	Maize	plastid	34.58	32.98
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	34.39	31.62
Os06t0499000-01	Rice	plastid	17.57	27.81
KRH38456	Soybean	plastid	28.97	17.57
KRG91542	Soybean	plastid	22.99	17.55
KRH08938	Soybean	plastid	29.16	16.0
KRH35286	Soybean	plastid	27.1	15.41

Protein Annotations

EMBL:ACUP02000371	EnsemblPlants:KRH75517	EnsemblPlantsGene:GLYMA_01G089500	EntrezGene:100803220	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	ProteinID:KRH75517	ProteinID:KRH75517.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002337B2D	UniProt:K7K2S7	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:-:27061882..27067990

Molecular Weight (calculated)

60088.6 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.437

Length

535 amino acids

Sequence
(BLAST)

001: MWSATSSPSI FLPHSLLRPL PRRRPLCASL SWASPDPSDG LGGWALLDAP AQPDNNKVAA FPSYAVVGFG TSLALVLAVF AASRKGFSFR FPRPMWGAVE
101: TRRDQNDAPE FDVSSGSKST LSEADPESNV TVTQADKSVA VEKPERVVIP VSVDSTQEEA LSVLKSLKII EDDVEANELC TRREFARWLV KSNSSLERSP
201: KHMIAPIVSL SGSVVTAFDD VGIDDPDFRS IQVLAEAGVI PSKLSWNNSF NYGGSDSQEN INFYPDRFIS RQDLIDWRAQ LEYDFFSGVV DEISIKKAGY
301: MDVKEITSPA VYVDMLAGDT SILRKVFGQS KRFQPNKPST KAQAAVALTS GRMKEAISAE LSRIEAENSA RLAEAGEIWS ELLSRGEIQR FWDEKLIEEK
401: NRGFDVERLY HVEVKNLEEE EINQDKISAE YLKEKATMDC QKQLLLNLKK EVDEISEKVA SERVTYVDER DVVQKLHEDL EFKHEELLNT KSTLEAEKEA
501: LQILRSWVED EARRSQARAA VLEEVGRRWK WDDQA

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.