CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045938_P005	Maize	mitochondrion, plastid	89.61	89.29
TraesCS7D01G229800.1	Wheat	plastid	62.9	63.24
TraesCS7A01G228700.1	Wheat	plastid	62.9	63.24
TraesCS7B01G195000.1	Wheat	plastid	62.54	62.88
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	57.35	54.98
Os06t0499000-01	Rice	plastid	32.97	54.44
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	19.18	39.93
Bra017353.1-P	Field mustard	plastid	34.41	35.56
CDY59871	Canola	plastid	34.59	35.41
CDY04174	Canola	plastid	34.23	35.37
KRH75517	Soybean	plastid	33.69	35.14
KRH70626	Soybean	plastid	33.51	34.89
AT3G25680.1	Thale cress	plastid	33.51	33.51
VIT_01s0011g02850.t01	Wine grape	plastid	34.23	33.16
PGSC0003DMT400002108	Potato	plastid	33.87	32.76
Solyc05g009940.2.1	Tomato	plastid	33.51	32.41
EER93049	Sorghum	plastid	24.73	14.6

Protein Annotations

EnsemblPlants:KXG19937	EnsemblPlantsGene:SORBI_3010G136200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	ProteinID:KXG19937	ProteinID:KXG19937.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0003C68FE8	UniProt:A0A194YJ06	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:20533978..20546912

Molecular Weight (calculated)

63189.9 Da

IEP (calculated)

4.983

GRAVY (calculated)

-0.513

Length

558 amino acids

Sequence
(BLAST)

001: MAVGPYTLRV SPPPRLDALL FPQLRPHLRC RVSARVAAAG TSWSPAAGDS EDGVGGWWVP EYEKPMKQGR RIGFGRAVVV GLGAPVAIAL AGLAWRFPSS
101: RKRIQQLIVA PLHYVQEKMS TMESTETIKE DASDRESDEI EISSATHDKK AEAITDDSRQ NYRTETASHF PFGVPTDPVH EEAFSILKKL QIIEKDVSSS
201: DFCTRREFAR WFVKLCSKFE RKRMQRIVPS KLTSGAVQCA FDDVNIDDPD FLYIQSLGES GIVSSKLSNS LETLTSGSHS KGNSLFLPDS YLSRFDLVNW
301: KVLVEHPFAE IDQKMLSQNV CILDLRACPD VSPSMLIELM AGENSIISRV FGNTRRLQPD KPVTKAQAAA ALTSGRMKEA IQEELNRLEA ENQAHLSVIA
401: EILEELISRG DIQQQWEEMM KKEQERALKV DNNLQHVLHE LANERTDREE ELADLLKERA DLERQNQELI NLRSEVDGMY DRLATENEEV MADQQTLENQ
501: LSDMTSKHQT VNEAKSYLEA EKEALTMLRT WVEDEAARVH ERAETLEKAL RRWRIPED

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.