Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G229800.1 | Wheat | plastid | 76.29 | 80.0 |
| TraesCS7B01G195000.1 | Wheat | plastid | 76.12 | 79.82 |
| TraesCS7A01G228700.1 | Wheat | plastid | 75.77 | 79.46 |
| KXG19937 | Sorghum | mitochondrion | 54.98 | 57.35 |
| Zm00001d045938_P005 | Maize | mitochondrion, plastid | 54.3 | 56.43 |
| Zm00001d037438_P002 | Maize | plastid | 54.3 | 56.33 |
| Os06t0499000-01 | Rice | plastid | 29.21 | 50.3 |
| GSMUA_Achr2P07080_001 | Banana | endoplasmic reticulum | 18.56 | 40.3 |
| KRH75517 | Soybean | plastid | 31.62 | 34.39 |
| KRH70626 | Soybean | plastid | 31.62 | 34.33 |
| PGSC0003DMT400002108 | Potato | plastid | 32.3 | 32.58 |
| Bra017353.1-P | Field mustard | plastid | 30.07 | 32.41 |
| Solyc05g009940.2.1 | Tomato | plastid | 31.96 | 32.24 |
| CDY04174 | Canola | plastid | 29.9 | 32.22 |
| CDY59871 | Canola | plastid | 30.07 | 32.11 |
| AT3G25680.1 | Thale cress | plastid | 30.76 | 32.08 |
| VIT_01s0011g02850.t01 | Wine grape | plastid | 31.62 | 31.94 |
| HORVU5Hr1G124610.7 | Barley | mitochondrion | 26.12 | 16.05 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G046700.22 | EnsemblPlantsGene:HORVU7Hr1G046700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009941 | ncoils:Coil | PANTHER:PTHR33740 | PANTHER:PTHR33740:SF1 |
| SEG:seg | UniParc:UPI000B46AAC5 | UniProt:A0A287WCF6 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:153297679..153305406
Molecular Weight (calculated)
65543.1 Da
IEP (calculated)
6.425
GRAVY (calculated)
-0.605
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: LGRLSWTFAL DPKWTPYDEA GGIKTLALGR AAAWPPPPPT RSASPRPRRH RGTTPLSFRS SAAARPLRRL LAGSQPAAAA RTTGLAAGGS PSNRRRRGGQ
101: GSGNLSWSDW VLRQRSLWLV SRGALHRRGS GLQQLIGAPL HYVQEKLSVP DSTEIPEDDA IDVSRVDVDE RNDTSPNDSS QNHIPAGGVR ISFTVPVDPM
201: HEEALSILKK LQQIIENDAS SGDFCTRREF ARWFVKLCSK LERKRMHRII PNLITSGSVE SAFDDVNFDD PDFLYIQSLG ESGIVPSKLS SFFGTSTNGY
301: QSANRNSNFL PESYLSRFDL VNWKLLVEYP FASELDQKML SKNVHTLDLS AWPDVTASVL TDLFDGDHNI VSKVFGNTRR LQHHKPVTKA QAAAALTSGR
401: MEEVVRDELN RLEAENQSRL SVMGEMMEEL INRGDIKHYW EDKMKKEQDH GFEVEKHLQD VLHELANERT DQEKEIADLL KEKSALERQN QELVCLRSEV
501: DGMYDRLATQ SLEVMADEEN LEKLSSDMSS KHQAVTEAKS YLEAEKEALT MLRSWVEQEA ARVHERAEVL ERAVRRWRVP AD
101: GSGNLSWSDW VLRQRSLWLV SRGALHRRGS GLQQLIGAPL HYVQEKLSVP DSTEIPEDDA IDVSRVDVDE RNDTSPNDSS QNHIPAGGVR ISFTVPVDPM
201: HEEALSILKK LQQIIENDAS SGDFCTRREF ARWFVKLCSK LERKRMHRII PNLITSGSVE SAFDDVNFDD PDFLYIQSLG ESGIVPSKLS SFFGTSTNGY
301: QSANRNSNFL PESYLSRFDL VNWKLLVEYP FASELDQKML SKNVHTLDLS AWPDVTASVL TDLFDGDHNI VSKVFGNTRR LQHHKPVTKA QAAAALTSGR
401: MEEVVRDELN RLEAENQSRL SVMGEMMEEL INRGDIKHYW EDKMKKEQDH GFEVEKHLQD VLHELANERT DQEKEIADLL KEKSALERQN QELVCLRSEV
501: DGMYDRLATQ SLEVMADEEN LEKLSSDMSS KHQAVTEAKS YLEAEKEALT MLRSWVEQEA ARVHERAEVL ERAVRRWRVP AD
001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
Arabidopsis Description
SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.