Factsheet for VIT_01s0011g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70626	Soybean	plastid	48.26	51.87
KRH75517	Soybean	plastid	48.09	51.78
AT3G25680.1	Thale cress	plastid	47.74	49.28
CDY04174	Canola	plastid	44.97	47.96
Bra017353.1-P	Field mustard	plastid	44.79	47.78
CDY59871	Canola	plastid	44.97	47.52
Solyc05g009940.2.1	Tomato	plastid	47.4	47.31
PGSC0003DMT400002108	Potato	plastid	46.53	46.45
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	19.44	41.79
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	21.53	38.04
TraesCS7D01G229800.1	Wheat	plastid	35.42	36.76
TraesCS7B01G195000.1	Wheat	plastid	35.07	36.4
TraesCS7A01G228700.1	Wheat	plastid	35.07	36.4
Zm00001d045938_P005	Maize	mitochondrion, plastid	33.51	34.46
KXG19937	Sorghum	mitochondrion	33.16	34.23
Zm00001d037438_P002	Maize	plastid	32.99	33.87
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	31.94	31.62
Os06t0499000-01	Rice	plastid	15.28	26.04
VIT_16s0050g00600.t01	Wine grape	plastid	27.43	14.64

Protein Annotations

EntrezGene:100259365	MapMan:35.2	ProteinID:CBI27078	ProteinID:CBI27078.3	ncoils:Coil	UniProt:D7T9A7
EMBL:FN595752	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
GO:GO:0055114	InterPro:IPR001119	PFAM:PF00395	PFscan:PS51272	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1
InterPro:SLH_dom	TMHMM:TMhelix	UniParc:UPI0001BE2B3D	ArrayExpress:VIT_01s0011g02850	EnsemblPlantsGene:VIT_01s0011g02850	EnsemblPlants:VIT_01s0011g02850.t01
RefSeq:XP_003631189.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:2528541..2534477

Molecular Weight (calculated)

64824.8 Da

IEP (calculated)

5.682

GRAVY (calculated)

-0.428

Length

576 amino acids

Sequence
(BLAST)

001: MCSSSASPSS LFLSTGTPIL RSRIVPIFSS SSPFINSHRF RNPRLCISSS VSETSFEVTW VSPERNASDD YGGWAVVESP CRKKKKGSSA LFCVVTGTSI
101: AILLSAIAYF SLSRKGFRLQ FNKPMHSIHE IFVRTKTEAG QSNTVYSNAS DVDTNIVEAG TESASNEIDE DVASASKKVK HVLIPVAADS TQQEALLVLK
201: KLKIIEDDVS ADELCTKREY ARWLVRANLL LERDPRHRIF SSSLPSGSII SAFDDVNAED RDYGSIQALA EAGIIPSKLS GNSNSALDSS KVQGEVYFSP
301: DRFISRQDLI NWKAQLEYKF MPGIKEKISR TKVDFMDMKE ISSDASPEFF IDMLAGDRSI VRKVFGQSKR FQPNKPSTKA QSAVALTSGR MTEVIHTELL
401: RLEAEKLSRE AEAEEIRSQL LNRGDIQSFW SEKIKDEKIR GFEVEKDYLA AVSDLEEERI VHVNCLTENL KEKAAMECQS QLLFRLKDEV DEMSERLACE
501: RTGYMAEQRN LQDMLNELQN KQEGVLDVKS ILEAEKEALR ILRSWVEDEA RKNQARAKVL EEVGRRWKWD SDAQMS

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.