Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G228700.1 | Wheat | plastid | 97.48 | 97.48 |
| TraesCS7D01G229800.1 | Wheat | plastid | 97.12 | 97.12 |
| HORVU7Hr1G046700.22 | Barley | cytosol, nucleus | 79.82 | 76.12 |
| KXG19937 | Sorghum | mitochondrion | 62.88 | 62.54 |
| Zm00001d045938_P005 | Maize | mitochondrion, plastid | 62.88 | 62.32 |
| Os06t0499000-01 | Rice | plastid | 37.3 | 61.24 |
| Zm00001d037438_P002 | Maize | plastid | 61.44 | 60.78 |
| GSMUA_Achr2P07080_001 | Banana | endoplasmic reticulum | 19.1 | 39.55 |
| KRH75517 | Soybean | plastid | 35.32 | 36.64 |
| KRH70626 | Soybean | plastid | 35.14 | 36.38 |
| VIT_01s0011g02850.t01 | Wine grape | plastid | 36.4 | 35.07 |
| CDY04174 | Canola | plastid | 34.05 | 35.0 |
| Bra017353.1-P | Field mustard | plastid | 34.05 | 35.0 |
| CDY59871 | Canola | plastid | 33.87 | 34.5 |
| PGSC0003DMT400002108 | Potato | plastid | 35.86 | 34.49 |
| Solyc05g009940.2.1 | Tomato | plastid | 35.5 | 34.14 |
| AT3G25680.1 | Thale cress | plastid | 34.23 | 34.05 |
| TraesCS7B01G000400.2 | Wheat | plastid | 28.29 | 16.9 |
| TraesCS5B01G572300.1 | Wheat | plastid | 27.57 | 16.83 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G195000.1 | EnsemblPlantsGene:TraesCS7B01G195000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009941 | ncoils:Coil | PANTHER:PTHR33740 | PANTHER:PTHR33740:SF1 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:334806299..334811659
Molecular Weight (calculated)
62139.5 Da
IEP (calculated)
5.437
GRAVY (calculated)
-0.482
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MATATTYTLR LTPPPPPPRH HAPLLPQLRR RAAAKVSASW VPAGGGNSDD GLGGWWLPEQ PAEKGRAGFG KAIVVGLGAS AAIALAGITW RSPSSRKCLQ
101: QLIGAPLHYV QEKLSVADST EIPEDDASVR ELGTIDVSRV NVDERNATSP DDSSQNHIPA GGVRISFTVP VDPMHEEALS ILKKLQIIEN DASPGDFCTR
201: REFARWFVKL CSKLERKRMH RIIPNLITSG SVESAFDDVN FDDPDFLYIQ SLGESGIVPS KLSSFFGTSA NGSQSANRNS HFLPESYLSR FDLVNWKLLV
301: EYPFASELDQ KMLSKNVHTL DLSAWPDVTA SVFMDLFGGD HSIVSKVFGN TRRLQHHKPV TKAQAAAALT SGRMEEVVRD ELNRLEVENQ SRLSAMGEMM
401: EELINRGDIK QYWEDKMKKE QDRGFEVEKH LQDVLHELAN ERMDQEKEIA DLLKEKSALE RQNQELVCLR SEVDGMYDRL ATQSLEIMAD EENLEKLSSD
501: MSSKHQAVTE AKSYLEAEKE ALTMLRSWVE QEAARVHERA EVLERAVRRW RVPAD
101: QLIGAPLHYV QEKLSVADST EIPEDDASVR ELGTIDVSRV NVDERNATSP DDSSQNHIPA GGVRISFTVP VDPMHEEALS ILKKLQIIEN DASPGDFCTR
201: REFARWFVKL CSKLERKRMH RIIPNLITSG SVESAFDDVN FDDPDFLYIQ SLGESGIVPS KLSSFFGTSA NGSQSANRNS HFLPESYLSR FDLVNWKLLV
301: EYPFASELDQ KMLSKNVHTL DLSAWPDVTA SVFMDLFGGD HSIVSKVFGN TRRLQHHKPV TKAQAAAALT SGRMEEVVRD ELNRLEVENQ SRLSAMGEMM
401: EELINRGDIK QYWEDKMKKE QDRGFEVEKH LQDVLHELAN ERMDQEKEIA DLLKEKSALE RQNQELVCLR SEVDGMYDRL ATQSLEIMAD EENLEKLSSD
501: MSSKHQAVTE AKSYLEAEKE ALTMLRSWVE QEAARVHERA EVLERAVRRW RVPAD
001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
Arabidopsis Description
SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.