Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- endoplasmic reticulum 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017353.1-P | Field mustard | plastid | 72.94 | 75.37 |
| CDY59871 | Canola | plastid | 73.48 | 75.23 |
| CDY04174 | Canola | plastid | 72.76 | 75.19 |
| VIT_01s0011g02850.t01 | Wine grape | plastid | 49.28 | 47.74 |
| KRH70626 | Soybean | plastid | 44.98 | 46.83 |
| KRH75517 | Soybean | plastid | 44.8 | 46.73 |
| Solyc05g009940.2.1 | Tomato | plastid | 43.91 | 42.46 |
| PGSC0003DMT400002108 | Potato | plastid | 43.37 | 41.94 |
| GSMUA_Achr2P07080_001 | Banana | endoplasmic reticulum | 18.46 | 38.43 |
| TraesCS7D01G229800.1 | Wheat | plastid | 34.59 | 34.77 |
| TraesCS7A01G228700.1 | Wheat | plastid | 34.23 | 34.41 |
| TraesCS7B01G195000.1 | Wheat | plastid | 34.05 | 34.23 |
| GSMUA_Achr2P07070_001 | Banana | extracellular, golgi | 19.71 | 33.74 |
| KXG19937 | Sorghum | mitochondrion | 33.51 | 33.51 |
| Zm00001d045938_P005 | Maize | mitochondrion, plastid | 33.15 | 33.04 |
| Zm00001d037438_P002 | Maize | plastid | 32.8 | 32.62 |
| HORVU7Hr1G046700.22 | Barley | cytosol, nucleus | 32.08 | 30.76 |
| Os06t0499000-01 | Rice | plastid | 17.38 | 28.7 |
| AT5G52410.2 | Thale cress | plastid | 25.27 | 18.53 |
| AT5G23890.1 | Thale cress | plastid | 27.96 | 16.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:822156 | ProteinID:AEE77050.1 | ArrayExpress:AT3G25680 | EnsemblPlantsGene:AT3G25680 | RefSeq:AT3G25680 |
| TAIR:AT3G25680 | RefSeq:AT3G25680-TAIR-G | EnsemblPlants:AT3G25680.1 | TAIR:AT3G25680.1 | Unigene:At.26463 | ncoils:Coil |
| UniProt:F4JA39 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001119 |
| RefSeq:NP_566775.2 | PFAM:PF00395 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51272 | PANTHER:PTHR33740 | PANTHER:PTHR33740:SF1 | InterPro:SLH_dom | TMHMM:TMhelix |
| UniParc:UPI000034EF8C | SEG:seg | : | : | : | : |
Description
SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
Coordinates
chr3:+:9349612..9352427
Molecular Weight (calculated)
63061.4 Da
IEP (calculated)
4.921
GRAVY (calculated)
-0.489
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.