Factsheet for Solyc03g083900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

extracellular: 22364583
extracellular: 26583031

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035984	Potato	plasma membrane	96.79	96.63
VIT_16s0022g00680.t01	Wine grape	plasma membrane	70.44	70.44
AT4G25240.1	Thale cress	plasma membrane	68.75	69.1
CDX89433	Canola	plasma membrane	69.26	68.56
Bra013877.1-P	Field mustard	plasma membrane	68.92	68.34
CDX94466	Canola	extracellular, plasma membrane, plastid, vacuole	68.58	67.78
KRH56354	Soybean	extracellular	67.4	67.51
KRH62611	Soybean	nucleus	67.23	67.23
CDX99917	Canola	plasma membrane	67.06	66.5
Bra029171.1-P	Field mustard	extracellular	65.71	66.5
CDY38866	Canola	extracellular	65.71	66.5
AT5G51480.1	Thale cress	extracellular, plasma membrane	66.05	66.05
CDY46940	Canola	plasma membrane	66.55	66.0
Solyc08g079090.2.1	Tomato	extracellular	65.54	65.87
Bra022551.1-P	Field mustard	plasma membrane	66.39	65.83
CDX91586	Canola	extracellular	65.88	65.33
CDY64023	Canola	extracellular	64.53	65.3
Solyc09g055930.2.1	Tomato	extracellular	59.46	60.27
CDY00478	Canola	cytosol	38.85	59.59
Bra034914.1-P	Field mustard	extracellular	6.93	52.56
CDY48940	Canola	extracellular	6.76	51.28
Solyc02g065170.2.1	Tomato	nucleus	44.76	49.17
Solyc01g111970.2.1	Tomato	extracellular	44.09	48.69
Solyc07g052240.2.1	Tomato	nucleus	43.92	47.88
Solyc04g082140.2.1	Tomato	extracellular	43.24	47.41
Solyc07g052230.2.1	Tomato	extracellular	42.57	46.93
Solyc12g094460.1.1	Tomato	extracellular	42.57	46.32
Solyc02g090360.2.1	Tomato	extracellular	41.89	46.1
Solyc02g080670.2.1	Tomato	nucleus	42.4	45.8
Solyc03g063150.2.1	Tomato	unclear	42.91	45.68
Solyc12g094470.1.1	Tomato	nucleus	41.89	45.67
Solyc11g008860.1.1	Tomato	extracellular	42.23	45.05
Solyc05g055710.2.1	Tomato	extracellular	34.29	44.71
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	42.06	44.7
Solyc05g055490.1.1	Tomato	extracellular	41.05	44.42
Solyc04g081520.1.1	Tomato	extracellular	39.36	43.07
Solyc02g080700.1.1	Tomato	cytosol	7.09	42.42
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	39.7	42.42
Solyc05g055720.1.1	Tomato	nucleus	6.08	40.0
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	41.05	33.2

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:Cupredoxin
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016722	GO:GO:0046658	GO:GO:0055114	InterPro:IPR008972	UniProt:K4BIG5	PFAM:PF00394
PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF123	SUPFAM:SSF49503	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc03g083900.2	EnsemblPlants:Solyc03g083900.2.1	TMHMM:TMhelix	UniParc:UPI0002768ED3	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:53824920..53828925

Molecular Weight (calculated)

65981.3 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.185

Length

592 amino acids

Sequence
(BLAST)

001: MASSSLLVHR LCCIALFFTL CFAADPFANF ELEYSYITAS PLGVPQQVVA VNGKFPGPIL NVTTNYNVVV DVKNKLDEEL LVTWSGIQMR RTSWQDGVLG
101: TNCPIPTGGR NFTYQFQVKD QIGSFFYAPS INMQRAAGGF GSFIVTNRNI IPIPFSPPDG DIVIIIGDWY TQSHKSLRKD LDDGKQLGMP DGVLINGKGP
201: YRYNTTLVPD GIDHETINVD PGNTYRVRVH NVGVSTCLNF RIQNHNLLLV ETEGYYTSQQ NYTSVDIHVG QSYTFLVTMD QNASSDYYIV ASSRFVNQTI
301: WQKVTGVGIL HYSNSKGKAA GPLPDPPNDV YDTSYALNQA MSIRQNVSAS GARPNPQGSF HYGQINVTDF YLLKSVPPVS IDGKLRATFN GISFKNPATP
401: IRLADLYYVK GDYKLDFPTK PMNRPPKVDT SIINATYKGF IEIVLQNNDT VVQSFHMDGY SFFVVGMGFG EWTENNRGSY NRWDAISRST TQVFPGGWTA
501: VLVSLDNVGV WNLRAENLDR WYLGQETYMR IINPEDHSNK TEMQKPDNAL YCGALAYMQK KQKVSSATTL FGSSGLYFTL LLVLSTVISL VY

Best Arabidopsis Sequence Match ( AT4G25240.2 )
(BLAST)

001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC

Arabidopsis Description

SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.