Factsheet for Solyc01g111970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 5
extracellular 6
endoplasmic reticulum 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048000	Potato	extracellular	91.42	93.87
VIT_03s0038g03570.t01	Wine grape	extracellular	77.24	76.38
KRH24127	Soybean	nucleus	74.07	72.98
KRH29100	Soybean	nucleus	74.25	72.76
Solyc04g082140.2.1	Tomato	extracellular	72.2	71.67
GSMUA_Achr5P11580_001	Banana	extracellular	71.27	70.87
Solyc07g052240.2.1	Tomato	nucleus	69.78	68.88
Solyc12g094460.1.1	Tomato	extracellular	69.4	68.38
Solyc07g052230.2.1	Tomato	extracellular	68.1	67.97
AT4G38420.1	Thale cress	extracellular	68.66	67.03
Solyc12g094470.1.1	Tomato	nucleus	66.98	66.11
Solyc02g080670.2.1	Tomato	nucleus	66.6	65.15
Bra022513.1-P	Field mustard	extracellular	63.06	61.57
AT4G28090.1	Thale cress	extracellular	62.69	61.43
CDX91548	Canola	cytosol	56.53	60.97
CDY64276	Canola	cytosol	69.03	60.26
Solyc02g065170.2.1	Tomato	nucleus	60.26	59.93
Solyc02g080700.1.1	Tomato	cytosol	10.82	58.59
CDY54804	Canola	extracellular, mitochondrion, nucleus, plastid	69.78	58.53
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	69.78	58.53
Solyc02g090360.2.1	Tomato	extracellular	57.09	56.88
CDY16369	Canola	mitochondrion	48.32	54.64
Solyc05g055710.2.1	Tomato	extracellular	44.78	52.86
Solyc11g008860.1.1	Tomato	extracellular	54.29	52.43
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	54.29	52.24
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	53.73	51.99
Solyc03g063150.2.1	Tomato	unclear	52.8	50.9
Solyc05g055720.1.1	Tomato	nucleus	8.21	48.89
Solyc04g081520.1.1	Tomato	extracellular	48.69	48.24
Solyc09g055930.2.1	Tomato	extracellular	51.31	47.09
Solyc05g055490.1.1	Tomato	extracellular	47.39	46.44
Solyc08g079090.2.1	Tomato	extracellular	49.07	44.65
Solyc03g083900.2.1	Tomato	extracellular	48.69	44.09
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	48.13	35.25

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like
InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972
UniProt:K4B459	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF64
SUPFAM:SSF49503	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g111970.2	EnsemblPlants:Solyc01g111970.2.1	UniParc:UPI0002767AB9	:

Description

No Description!

Coordinates

chr1:-:98108560..98112014

Molecular Weight (calculated)

60586.4 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.318

Length

536 amino acids

Sequence
(BLAST)

001: MRSEKGRSWC WIALALLYME GVVVAEDPYR YFDWRITYGD IHPLGVRQQG ILINGQFPGP DIYSVTNDNL IINVHNHLPH PFLLTWNGLQ QRKNSFQDGV
101: YGTTCPIPPG KNFTYTMQVK DQIGSFFYFP SLQFHKAAGG FGGIRILSRP KIPVPFPEPA GDFTILIGDW YKTDHKVLKT ILDHGKKLPF PDGIQINGLG
201: RDGAKFTVEP GKTYRLRICN VGLQNSLNFR IQGHKMKLVE VEGTHTIQTT LSSLDIHVGQ SYSVLVTADQ RAQDYYIAVS SRFTTQILNS TAILHYRNSK
301: KTVSGPPPPG PTADISWSLN QARSIRTNLT ASGPRPNPQG SYHYGQINVT RTIRLANHAG LVDKKQRYAV NGVSFIPADT PLKLADYYNI DGVFKVGSIQ
401: DKPTGRNIHL DTAVMGADYR AFVEIVFENR ENIVQSWHLD GYSFFVVGMD VGIWSPASKN QYNLIDAVSR CTTQVYPRSW TAIYVPLDNV GMWNLRSQFW
501: ARQYLGHQFY LRVYTPVKSY RDEYPIPKNA LHCGRA

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.