Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G28090.1 | Thale cress | extracellular | 75.41 | 75.69 |
| CDY64276 | Canola | cytosol | 81.97 | 73.29 |
| CDY54804 | Canola | extracellular, mitochondrion, nucleus, plastid | 82.15 | 70.58 |
| Bra033564.1-P | Field mustard | extracellular, mitochondrion, nucleus, plastid | 82.15 | 70.58 |
| PGSC0003DMT400048000 | Potato | extracellular | 66.85 | 70.31 |
| KRH24127 | Soybean | nucleus | 69.03 | 69.67 |
| VIT_03s0038g03570.t01 | Wine grape | extracellular | 68.49 | 69.37 |
| KRH29100 | Soybean | nucleus | 68.67 | 68.92 |
| Solyc01g111970.2.1 | Tomato | extracellular | 67.03 | 68.66 |
| AT1G76160.1 | Thale cress | extracellular | 65.21 | 66.17 |
| AT1G41830.1 | Thale cress | extracellular | 64.48 | 65.31 |
| GSMUA_Achr5P11580_001 | Banana | extracellular | 63.75 | 64.94 |
| AT1G21860.1 | Thale cress | extracellular | 63.57 | 64.87 |
| AT1G21850.1 | Thale cress | extracellular | 64.66 | 64.43 |
| AT4G22010.1 | Thale cress | extracellular | 62.66 | 63.59 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 54.28 | 54.58 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 51.18 | 51.0 |
| AT1G55560.1 | Thale cress | extracellular | 50.27 | 50.27 |
| AT2G23630.2 | Thale cress | extracellular | 49.91 | 50.18 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 50.27 | 49.82 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 50.27 | 49.73 |
| AT4G37160.1 | Thale cress | extracellular | 48.63 | 49.35 |
| AT1G75790.1 | Thale cress | extracellular | 45.72 | 46.05 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 48.09 | 44.97 |
| AT4G25240.1 | Thale cress | plasma membrane | 47.18 | 43.97 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 45.72 | 42.4 |
| AT5G48450.1 | Thale cress | extracellular | 47.72 | 42.19 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:829999 | UniProt:A0A178UYB7 | ProteinID:AEE86927.1 | ArrayExpress:AT4G38420 |
| EnsemblPlantsGene:AT4G38420 | RefSeq:AT4G38420 | TAIR:AT4G38420 | RefSeq:AT4G38420-TAIR-G | EnsemblPlants:AT4G38420.1 | TAIR:AT4G38420.1 |
| EMBL:AY072215 | EMBL:AY096593 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like |
| InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_195555.2 |
| ProteinID:OAO98605.1 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009032 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF64 | UniProt:Q8VYB3 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000009F0EA | SEG:seg | Symbol:sks9 | : |
Description
sks9Putative pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8VYB3]
Coordinates
chr4:+:17982616..17985384
Molecular Weight (calculated)
62494.8 Da
IEP (calculated)
9.979
GRAVY (calculated)
-0.350
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MCWWLNGAVW TMMMMTISII SFVQADDPYR FFDWRVTYGN ISPLGIPQRG ILINGQYPGP DIYSVTNDNL IINVHNDLDE PFLLSWNGVQ LRKNSYQDGV
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.