Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- plastid 1
- vacuole 5
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013877.1-P | Field mustard | plasma membrane | 89.64 | 88.44 |
| CDX89433 | Canola | plasma membrane | 89.47 | 88.13 |
| CDX94466 | Canola | extracellular, plasma membrane, plastid, vacuole | 89.47 | 87.98 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 81.15 | 80.74 |
| PGSC0003DMT400035984 | Potato | plasma membrane | 69.44 | 68.97 |
| Solyc03g083900.2.1 | Tomato | extracellular | 69.1 | 68.75 |
| KRH62611 | Soybean | nucleus | 68.42 | 68.07 |
| VIT_16s0022g00680.t01 | Wine grape | plasma membrane | 67.91 | 67.57 |
| KRH56354 | Soybean | extracellular | 67.74 | 67.51 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 64.52 | 64.74 |
| AT5G48450.1 | Thale cress | extracellular | 56.37 | 53.46 |
| AT4G22010.1 | Thale cress | extracellular | 45.33 | 49.35 |
| AT1G21860.1 | Thale cress | extracellular | 43.97 | 48.14 |
| AT1G76160.1 | Thale cress | extracellular | 44.14 | 48.06 |
| AT1G21850.1 | Thale cress | extracellular | 44.48 | 47.55 |
| AT4G37160.1 | Thale cress | extracellular | 43.46 | 47.32 |
| AT1G41830.1 | Thale cress | extracellular | 43.46 | 47.23 |
| AT4G38420.1 | Thale cress | extracellular | 43.97 | 47.18 |
| AT1G75790.1 | Thale cress | extracellular | 42.78 | 46.24 |
| AT2G23630.2 | Thale cress | extracellular | 42.78 | 46.15 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 43.12 | 45.85 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 42.61 | 45.55 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 42.61 | 45.23 |
| AT1G55560.1 | Thale cress | extracellular | 42.11 | 45.17 |
| AT4G28090.1 | Thale cress | extracellular | 41.77 | 44.97 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 40.92 | 44.14 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:828627 | UniProt:A0A178UTC9 | ProteinID:AEE85030.1 | ProteinID:ANM66973.1 |
| ArrayExpress:AT4G25240 | EnsemblPlantsGene:AT4G25240 | RefSeq:AT4G25240 | TAIR:AT4G25240 | RefSeq:AT4G25240-TAIR-G | EnsemblPlants:AT4G25240.1 |
| TAIR:AT4G25240.1 | EMBL:AY074379 | EMBL:AY091230 | Unigene:At.32280 | ProteinID:CAA23065.1 | ProteinID:CAB81335.1 |
| InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like | InterPro:CuRO_2_AO-like | InterPro:CuRO_3_AO-like |
| InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0016020 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0031225 | GO:GO:0046658 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:IPR008972 | RefSeq:NP_001320060.1 | RefSeq:NP_194254.2 | ProteinID:OAO97118.1 | PFAM:PF00394 | PFAM:PF07731 |
| PFAM:PF07732 | PO:PO:0000005 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF123 |
| UniProt:Q8VXX5 | Symbol:SKS1 | SUPFAM:SSF49503 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000009E1D7 |
| SEG:seg | : | : | : | : | : |
Description
SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
Coordinates
chr4:+:12930231..12933892
Molecular Weight (calculated)
65880.4 Da
IEP (calculated)
7.397
GRAVY (calculated)
-0.168
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.