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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 5
  • extracellular 7
  • vacuole 5
  • plasma membrane 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82897 Canola extracellular 93.9 93.9
CDX79120 Canola extracellular 93.53 93.53
Bra013582.1-P Field mustard extracellular 92.79 92.79
VIT_10s0116g01610.t01 Wine grape extracellular 75.6 75.74
KRH51114 Soybean endoplasmic reticulum 76.16 75.32
KRH02049 Soybean nucleus 75.42 74.32
Solyc02g080670.2.1 Tomato nucleus 73.57 72.63
GSMUA_Achr5P26550_001 Banana cytosol 17.38 72.31
PGSC0003DMT400042483 Potato extracellular 73.01 72.21
Os06t0678800-01 Rice extracellular 69.5 69.37
EER90222 Sorghum extracellular 69.5 68.86
Os07t0510900-01 Rice extracellular, peroxisome 58.96 68.75
Zm00001d014366_P002 Maize extracellular 69.5 68.61
TraesCS2B01G274800.1 Wheat vacuole 68.95 68.44
TraesCS2D01G230800.1 Wheat extracellular 68.95 68.44
TraesCS2A01G224600.1 Wheat extracellular 68.76 68.26
AT1G76160.1 Thale cress extracellular 68.21 68.21
TraesCS7B01G359700.1 Wheat extracellular 68.02 67.9
HORVU7Hr1G105620.1 Barley extracellular 68.02 67.9
HORVU2Hr1G047260.1 Barley extracellular, golgi, vacuole 69.13 67.88
GSMUA_Achr5P26560_001 Banana extracellular 43.44 67.72
EER97278 Sorghum extracellular, golgi 68.58 67.7
TraesCS7D01G447200.1 Wheat extracellular 67.65 67.53
TraesCS7A01G459400.1 Wheat extracellular 67.84 67.46
KRH11453 Soybean extracellular 56.56 67.11
AT1G41830.1 Thale cress extracellular 66.91 66.79
Zm00001d021599_P002 Maize extracellular, plasma membrane, vacuole 67.65 65.59
AT1G21860.1 Thale cress extracellular 64.88 65.24
AT1G21850.1 Thale cress extracellular 65.99 64.79
AT4G38420.1 Thale cress extracellular 63.59 62.66
Os07t0510833-00 Rice extracellular 10.54 57.0
AT4G28090.1 Thale cress extracellular 57.12 56.49
AT5G66920.1 Thale cress extracellular, plasma membrane, vacuole 56.56 56.04
AT2G23630.2 Thale cress extracellular 54.9 54.4
AT4G37160.1 Thale cress extracellular 53.05 53.05
AT3G13390.1 Thale cress extracellular, plasma membrane, vacuole 53.05 51.81
AT1G55570.1 Thale cress extracellular, plasma membrane 52.87 51.53
AT3G13400.1 Thale cress extracellular, plasma membrane 52.31 51.36
AT1G55560.1 Thale cress extracellular 51.02 50.27
AT1G75790.1 Thale cress extracellular 48.24 47.89
AT4G12420.2 Thale cress extracellular, plasma membrane 50.46 46.51
AT4G25240.1 Thale cress plasma membrane 49.35 45.33
AT5G51480.1 Thale cress extracellular, plasma membrane 48.06 43.92
AT5G48450.1 Thale cress extracellular 47.69 41.55
Protein Annotations
Gene3D:2.60.40.420MapMan:50.1.10EntrezGene:828290ProteinID:AEE84542.1ArrayExpress:AT4G22010EnsemblPlantsGene:AT4G22010
RefSeq:AT4G22010TAIR:AT4G22010RefSeq:AT4G22010-TAIR-GEnsemblPlants:AT4G22010.1TAIR:AT4G22010.1EMBL:AY081335
Unigene:At.27922EMBL:BT008899ProteinID:CAA18104.1ProteinID:CAB79156.1InterPro:Cu-oxidaseInterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3InterPro:CupredoxinGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005507
GO:GO:0005575GO:GO:0005618GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009505
GO:GO:0009506GO:GO:0016020GO:GO:0016491GO:GO:0016722GO:GO:0030312GO:GO:0055114
InterPro:IPR008972RefSeq:NP_193932.1UniProt:O65449PFAM:PF00394PFAM:PF07731PFAM:PF07732
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PANTHER:PTHR11709PANTHER:PTHR11709:SF11SUPFAM:SSF49503SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI00000489B3SEG:segSymbol:sks4:::
Description
sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
Coordinates
chr4:+:11663186..11666716
Molecular Weight (calculated)
60459.2 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.232
Length
541 amino acids
Sequence
(BLAST)
001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.