Factsheet for TraesCS2D01G230800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G224600.1	Wheat	extracellular	99.27	99.27
TraesCS2B01G274800.1	Wheat	vacuole	98.9	98.9
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	96.51	95.46
EER97278	Sorghum	extracellular, golgi	89.17	88.69
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	86.97	84.95
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	16.88	74.8
VIT_12s0059g00770.t01	Wine grape	extracellular	73.58	74.12
VIT_10s0116g01610.t01	Wine grape	extracellular	72.29	72.96
TraesCS7D01G447200.1	Wheat	extracellular	72.48	72.88
Solyc07g052240.2.1	Tomato	nucleus	71.01	71.27
KRH26769	Soybean	endoplasmic reticulum	69.91	71.08
PGSC0003DMT400074510	Potato	extracellular	70.09	70.61
KRH25361	Soybean	mitochondrion, nucleus	69.36	70.39
KRH56153	Soybean	mitochondrion, nucleus	69.17	70.2
CDX79120	Canola	extracellular	69.17	69.69
Solyc02g080670.2.1	Tomato	nucleus	69.91	69.53
CDX82897	Canola	extracellular	68.99	69.5
PGSC0003DMT400042483	Potato	extracellular	69.72	69.47
Bra013582.1-P	Field mustard	extracellular	68.81	69.32
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	60.73	68.96
AT4G22010.1	Thale cress	extracellular	68.44	68.95
Solyc07g052230.2.1	Tomato	extracellular	67.89	68.9
KRH51114	Soybean	endoplasmic reticulum	68.99	68.74
Solyc02g080700.1.1	Tomato	cytosol	12.48	68.69
KRH02049	Soybean	nucleus	68.81	68.31
Os07t0510833-00	Rice	extracellular	11.38	62.0
KRH11453	Soybean	extracellular	50.28	60.09
TraesCS2D01G403100.1	Wheat	extracellular	61.47	60.04
TraesCS2D01G259100.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	56.15	56.25
TraesCS3D01G333700.1	Wheat	extracellular, golgi, vacuole	50.64	49.64
TraesCS3D01G171100.1	Wheat	mitochondrion	50.46	49.02
TraesCS1D01G303600.1	Wheat	extracellular	50.09	48.84
TraesCS7D01G008600.1	Wheat	golgi	50.64	46.15
TraesCS1D01G162800.1	Wheat	extracellular, golgi	50.28	45.67
TraesCS3D01G086400.1	Wheat	extracellular	49.54	45.23
TraesCS7D01G297700.1	Wheat	extracellular	47.89	43.72
CDX76855	Canola	cytoskeleton, cytosol, extracellular	15.96	34.94
TraesCS1D01G295000.2	Wheat	extracellular, mitochondrion, plasma membrane, plastid	13.03	31.7

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like
InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008972	PFAM:PF00394	PFAM:PF07731
PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF106	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2D01G230800	EnsemblPlants:TraesCS2D01G230800.1	TIGR:cd13846	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:-:201943195..201949309

Molecular Weight (calculated)

60316.7 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.190

Length

545 amino acids

Sequence
(BLAST)

001: MARGGSAVAV LSFLLGLPLL SVLVAGEDPY RFFTWNVSYG DIYPLGVKQQ GILINGQFPG PQIEAVTNDN LVVNVFNKLN EPFLLSWSGL QQRRNSFEDG
101: VAGTTCPIPP GANFTYILQA KDQIGTYFYF PSLAFHKAAG GFGGIRVLSR PRIPVPFPPP AADYTVLIGD WYKTNHTDLR YMLDSGKALG FPDGLLINGR
201: GWNGYTFTVQ PGMTYRFRIT NVGLATSLNI RFQGHTMKLV EVEGSHTMQT AYSSLDVHLG QSYSVLLTAD QPGFDYSIVV STRFTTKIIS TTAVLHYANS
301: AGKAPGPLPG GPTTQIDWSL NQARSIRWNL TASGPRPNPQ GSYHYGQVPT TKTIRLANSA ATINGKQRYA VNSVSHVNAD TPLKIADYYK IPGVFSVGTI
401: SDSPTYGGAY LRTSVMGADY RGYVEIVFEN SENEVQSWHI DGYAFWVVGM NGGKWSPASR QIYNLRDGVS RYTVQVYPNA WTAIYMPLDN VGMWNVRSET
501: WARQYLGQQF YLRVWTPSTS WRDEFPIPKN ALLCGRAAGR RTRPF

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.