CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 5
endoplasmic reticulum 4
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56153	Soybean	mitochondrion, nucleus	97.58	97.58
KRH26769	Soybean	endoplasmic reticulum	83.99	84.14
VIT_12s0059g00770.t01	Wine grape	extracellular	83.24	82.62
Solyc07g052240.2.1	Tomato	nucleus	79.14	78.27
Solyc07g052230.2.1	Tomato	extracellular	78.21	78.21
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	69.83	78.12
PGSC0003DMT400074510	Potato	extracellular	78.21	77.63
GSMUA_Achr5P26550_001	Banana	cytosol	18.44	76.15
TraesCS7B01G359700.1	Wheat	extracellular	73.0	72.32
HORVU7Hr1G105620.1	Barley	extracellular	72.63	71.96
Os06t0678800-01	Rice	extracellular	72.44	71.77
TraesCS7D01G447200.1	Wheat	extracellular	72.25	71.59
TraesCS7A01G459400.1	Wheat	extracellular	72.25	71.32
EER90222	Sorghum	extracellular	71.32	70.15
GSMUA_Achr5P26560_001	Banana	extracellular	45.25	70.03
Zm00001d014366_P002	Maize	extracellular	71.32	69.89
KRH06000	Soybean	endoplasmic reticulum	70.2	69.69
TraesCS2A01G224600.1	Wheat	extracellular	70.39	69.36
TraesCS2D01G230800.1	Wheat	extracellular	70.39	69.36
TraesCS2B01G274800.1	Wheat	vacuole	70.2	69.17
EER97278	Sorghum	extracellular, golgi	70.39	68.98
KRH17495	Soybean	nucleus	70.2	68.92
KRH51114	Soybean	endoplasmic reticulum	70.2	68.92
Os07t0510900-01	Rice	extracellular, peroxisome	59.22	68.53
KRH60965	Soybean	nucleus	69.65	68.37
KRH51639	Soybean	nucleus	69.65	68.37
KRH02049	Soybean	nucleus	69.83	68.31
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	69.83	68.06
KRH24127	Soybean	nucleus	68.9	68.01
KRH29100	Soybean	nucleus	68.34	67.09
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	69.27	66.67
KRH11453	Soybean	extracellular	51.96	61.18
KRH76937	Soybean	endoplasmic reticulum	57.91	57.59
KRH04707	Soybean	endoplasmic reticulum	57.73	57.3
KRH57764	Soybean	cytosol, extracellular, plastid	45.25	57.18
KRH28523	Soybean	extracellular	56.98	56.98
Os07t0510833-00	Rice	extracellular	10.43	56.0
KRH04708	Soybean	endoplasmic reticulum	54.0	53.31
KRH57766	Soybean	extracellular	18.62	53.19
KRH31599	Soybean	extracellular	53.63	52.17
KRH50513	Soybean	vacuole	52.7	51.45
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	51.77	50.36
KRG89471	Soybean	mitochondrion	52.14	50.27
KRH57767	Soybean	cytosol, peroxisome	31.66	47.49
KRH57349	Soybean	endoplasmic reticulum	49.72	44.72
KRH04081	Soybean	extracellular	49.16	44.59
KRH38383	Soybean	cytosol, extracellular, peroxisome	43.2	44.36
KRH56354	Soybean	extracellular	48.6	44.16
KRH18028	Soybean	cytosol	25.88	44.13
KRG99235	Soybean	mitochondrion	10.24	44.0
KRH62611	Soybean	nucleus	48.23	43.75
KRG92132	Soybean	extracellular	46.0	41.3
KRG93978	Soybean	extracellular	23.65	40.71
KRH46577	Soybean	mitochondrion	48.04	40.5
KRH34656	Soybean	extracellular	44.69	40.0
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	42.64	37.98

Protein Annotations

EntrezGene:100775285	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02007245	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_12G097700	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722
GO:GO:0030312	GO:GO:0055114	UniProt:I1LRP4	InterPro:IPR008972	EnsemblPlants:KRH25361	ProteinID:KRH25361
ProteinID:KRH25361.1	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PFscan:PS51257	PANTHER:PTHR11709
PANTHER:PTHR11709:SF106	SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000233C42B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:8390539..8395322

Molecular Weight (calculated)

60208.1 Da

IEP (calculated)

7.316

GRAVY (calculated)

-0.247

Length

537 amino acids

Sequence
(BLAST)

001: MGCSIRECCV LFLVLLVSCA RGEDPYRFYT WNVTYGDIYP LGVKQQGILI NWQFPGPQIE AVTNDNLIIN VYNSLDEPFL LSWNGVLQRR NSWQDGVYGT
101: NCPILPGHNF TYVLQVKDQI GSYFYYPSLA FHKAAGGYGG FKIESRPGIP VPFPPPAGDF TILAGDWYKR NHTDLRAILD GGSDLPFPDG IIINGRGSNA
201: YTFTVDQGKT YRFRISNVGL TSSINFRIQG HKMTIVEVEG THTLQNIYDS LDVHLGQTYS VLVTADQPPQ DYLIVVTTRF TSQVLNATSM FRYSNSGGGV
301: TGLLPWGPTI QVDWSLNQAR SLRRNLTASG PRPNPQGSYH YGLINTTRTI RLQNSAPVIN GKQRYAVNSV SFIPADTPLK LADYYKIQGV FSLGSIPDYP
401: TGSGGYLQTS VMEADFRGFV EVVFENTEDT VESWHVDGHS FFVVGMDGGQ WSSASRLNYN LRDTISRSTV QVYPKSWTAI YMPLDNVGMW NVRSENWVHQ
501: YLGQQFYLRV YSPANSWRDE YPIPSNAIRC GKAVGHY

Best Arabidopsis Sequence Match ( AT1G21850.1 )
(BLAST)

001: MEVKSVNTTA MILGLFFLIS FVAAEDPYKF FEWHVTYGNI SPLKVAQQGI LINGKFPGPD IAAVTNDNLI INVFNHLDEP FLISWSGIRN WRNSYQDGVY
101: GTTCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GAIRISSRPR IPVPFPAPAG DYTVLIGDWY KTNHKDLRAQ LDNGGKLPFP DGILINGRGS
201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHKMKLVEVE GTHTIQTPFS SLDVHVGQSY SVLITADQPA KDYYIVVSSR FTSKILITAG VLHYSNSAGP
301: VSGPIPEAPI QLRWSFDQAR AIKTNLAASG PRPNPQGTYH YGKIKVTRTI KLASSAGNIN GKQRYAVNSA SFYPTDTPLK LADYFKIAGV YNPGSIPDQP
401: THGAIYPVTS VMQTDYKAFV EIVFENWEDI VQTWHLDGYS FFVVGMELGK WSAASRKVYN LNDAVSRCTV QVYPRSWTAI YVSLDNVGMW NLRSELWERQ
501: YLGQQFYMRV YTPSTSLRDE YLIPKNALLC GRATGHHTTT PGPLSEGSER F

Arabidopsis Description

sks8Sks8 [Source:UniProtKB/TrEMBL;Acc:A0A178W9U5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.