CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g00770.t01	Wine grape	extracellular	86.57	85.77
KRH25361	Soybean	mitochondrion, nucleus	84.14	83.99
KRH56153	Soybean	mitochondrion, nucleus	83.96	83.8
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	72.76	81.25
Solyc07g052240.2.1	Tomato	nucleus	81.9	80.85
Solyc07g052230.2.1	Tomato	extracellular	80.78	80.63
PGSC0003DMT400074510	Potato	extracellular	81.34	80.59
GSMUA_Achr5P26550_001	Banana	cytosol	18.47	76.15
TraesCS7B01G359700.1	Wheat	extracellular	74.81	73.99
GSMUA_Achr5P26560_001	Banana	extracellular	47.57	73.49
TraesCS7A01G459400.1	Wheat	extracellular	74.44	73.35
HORVU7Hr1G105620.1	Barley	extracellular	73.69	72.88
TraesCS7D01G447200.1	Wheat	extracellular	73.51	72.69
Os06t0678800-01	Rice	extracellular	73.32	72.51
EER90222	Sorghum	extracellular	73.69	72.34
Zm00001d014366_P002	Maize	extracellular	73.32	71.72
KRH51114	Soybean	endoplasmic reticulum	72.39	70.93
KRH06000	Soybean	endoplasmic reticulum	71.27	70.61
KRH02049	Soybean	nucleus	71.83	70.13
TraesCS2B01G274800.1	Wheat	vacuole	71.27	70.09
KRH17495	Soybean	nucleus	71.46	70.02
TraesCS2D01G230800.1	Wheat	extracellular	71.08	69.91
KRH24127	Soybean	nucleus	70.9	69.85
TraesCS2A01G224600.1	Wheat	extracellular	70.9	69.72
KRH60965	Soybean	nucleus	70.9	69.47
KRH51639	Soybean	nucleus	70.9	69.47
Os07t0510900-01	Rice	extracellular, peroxisome	59.7	68.97
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	70.9	68.97
KRH29100	Soybean	nucleus	70.34	68.92
EER97278	Sorghum	extracellular, golgi	69.96	68.43
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	68.1	65.41
KRH11453	Soybean	extracellular	54.29	63.82
KRH57764	Soybean	cytosol, extracellular, plastid	46.64	58.82
KRH76937	Soybean	endoplasmic reticulum	58.96	58.52
KRH04707	Soybean	endoplasmic reticulum	58.96	58.41
KRH28523	Soybean	extracellular	58.4	58.29
KRH57766	Soybean	extracellular	19.59	55.85
KRH04708	Soybean	endoplasmic reticulum	55.78	54.96
Os07t0510833-00	Rice	extracellular	9.89	53.0
KRH31599	Soybean	extracellular	54.48	52.9
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	52.99	51.45
KRH50513	Soybean	vacuole	51.68	50.36
KRH57767	Soybean	cytosol, peroxisome	33.58	50.28
KRG89471	Soybean	mitochondrion	50.75	48.83
KRH04081	Soybean	extracellular	50.0	45.27
KRH38383	Soybean	cytosol, extracellular, peroxisome	44.03	45.12
KRH56354	Soybean	extracellular	49.63	45.01
KRH18028	Soybean	cytosol	26.31	44.76
KRH57349	Soybean	endoplasmic reticulum	49.81	44.72
KRH62611	Soybean	nucleus	48.88	44.26
KRG99235	Soybean	mitochondrion	10.26	44.0
KRG92132	Soybean	extracellular	47.01	42.14
KRH46577	Soybean	mitochondrion	49.81	41.92
KRG93978	Soybean	extracellular	23.88	41.03
KRH34656	Soybean	extracellular	45.52	40.67
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	43.47	38.64

Protein Annotations

EntrezGene:100791301	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02007744	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_2_AO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_12G192800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722
GO:GO:0030312	GO:GO:0055114	UniProt:I1LU45	InterPro:IPR008972	EnsemblPlants:KRH26769	ProteinID:KRH26769
ProteinID:KRH26769.1	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF106
SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000233C2BC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:35434955..35439253

Molecular Weight (calculated)

59729.4 Da

IEP (calculated)

7.364

GRAVY (calculated)

-0.268

Length

536 amino acids

Sequence
(BLAST)

001: MSYSRILNSL LLVVLLVTCA SGEDPYRFYT WNVTYGDIYP LGMKQQGILI NGQFPGPQIE SVTNDNLILH VFNSLDEPFL ISWNGVQQRR NSWQDGVYGT
101: NCPIPPGKNF TYVLQVKDQI GSYFYFPSLA FHKAAGGYGG FKIASRSVIP VPFPPPAGDF TILAGDWYKR NHTDLRAILD GGSDLPFPDG LIINGRGSNA
201: YAFTVDQGKT YRFRISNVGL TTSINFRIQG HKMLLVEVEG IHTLQNTYDS LDIHLGQSYS VLVTADQPPQ DYYIVVSTRF TSQVLTATSI LHYSNSPTSV
301: SSPPPGGPTT QIDWSLDQAR SLRRNLTASG PRPNPQGSYH YGLINTTRTV RLQNSAGIIN GKQRYAVNSV SFIPADTPLK LADYFKIPGV FNLGSIPENP
401: TGSDCYLQTS VMAADFRGYA EIVFENPEDT VQSWHVDGHH FYVVGMDGGQ WSTSSRSNYN LRDTISRCTV QVYPKSWTAV YMPLDNVGMW NVRSENWARQ
501: YLGQQFYLGV YSPANSWRDE YPIPSNALLC GRAIGH

Best Arabidopsis Sequence Match ( AT1G21850.1 )
(BLAST)

001: MEVKSVNTTA MILGLFFLIS FVAAEDPYKF FEWHVTYGNI SPLKVAQQGI LINGKFPGPD IAAVTNDNLI INVFNHLDEP FLISWSGIRN WRNSYQDGVY
101: GTTCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GAIRISSRPR IPVPFPAPAG DYTVLIGDWY KTNHKDLRAQ LDNGGKLPFP DGILINGRGS
201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHKMKLVEVE GTHTIQTPFS SLDVHVGQSY SVLITADQPA KDYYIVVSSR FTSKILITAG VLHYSNSAGP
301: VSGPIPEAPI QLRWSFDQAR AIKTNLAASG PRPNPQGTYH YGKIKVTRTI KLASSAGNIN GKQRYAVNSA SFYPTDTPLK LADYFKIAGV YNPGSIPDQP
401: THGAIYPVTS VMQTDYKAFV EIVFENWEDI VQTWHLDGYS FFVVGMELGK WSAASRKVYN LNDAVSRCTV QVYPRSWTAI YVSLDNVGMW NLRSELWERQ
501: YLGQQFYMRV YTPSTSLRDE YLIPKNALLC GRATGHHTTT PGPLSEGSER F

Arabidopsis Description

sks8Sks8 [Source:UniProtKB/TrEMBL;Acc:A0A178W9U5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.