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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
nucleus: 21132161
endoplasmic reticulum: 27224218
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH17495 Soybean nucleus 96.12 95.06
KRH60965 Soybean nucleus 88.54 87.57
KRH51639 Soybean nucleus 87.62 86.65
Bra015781.1-P Field mustard extracellular 84.66 84.66
CDX73238 Canola extracellular 84.66 84.66
CDX87633 Canola extracellular 84.47 84.47
VIT_18s0001g00470.t01 Wine grape extracellular 83.18 83.18
Bra008241.1-P Field mustard extracellular 82.81 81.75
CDY68834 Canola extracellular, vacuole 82.81 81.6
CDY55201 Canola extracellular 82.62 81.42
AT1G76160.1 Thale cress extracellular 81.33 81.33
CDY67479 Canola extracellular 80.04 80.04
Bra034943.1-P Field mustard extracellular 80.04 79.89
CDY35790 Canola extracellular 80.04 79.89
AT1G41830.1 Thale cress extracellular 79.67 79.52
Solyc04g082140.2.1 Tomato extracellular 79.11 79.26
PGSC0003DMT400025805 Potato extracellular 79.11 79.26
Solyc12g094460.1.1 Tomato extracellular 76.53 76.1
PGSC0003DMT400075398 Potato extracellular 76.16 75.74
KRH24127 Soybean nucleus 74.31 73.9
KRH29100 Soybean nucleus 74.12 73.31
AT1G21860.1 Thale cress extracellular 72.46 72.86
AT1G21850.1 Thale cress extracellular 73.94 72.6
Solyc12g094470.1.1 Tomato nucleus 72.83 72.56
PGSC0003DMT400075620 Potato extracellular 72.83 72.56
KRH26769 Soybean endoplasmic reticulum 70.61 71.27
KRH56153 Soybean mitochondrion, nucleus 70.24 70.76
KRH25361 Soybean mitochondrion, nucleus 69.69 70.2
CDY31468 Canola extracellular 71.16 69.87
KRH51114 Soybean endoplasmic reticulum 69.69 68.92
KRH02049 Soybean nucleus 69.69 68.67
Bra025818.1-P Field mustard extracellular 69.69 68.42
KRH11453 Soybean extracellular 53.05 62.94
KRH57764 Soybean cytosol, extracellular, plastid 46.21 58.82
KRH76937 Soybean endoplasmic reticulum 58.23 58.33
KRH28523 Soybean extracellular 57.67 58.1
KRH04707 Soybean endoplasmic reticulum 57.49 57.49
CDY29530 Canola plastid 63.96 57.1
KRH31599 Soybean extracellular 56.01 54.89
KRH04708 Soybean endoplasmic reticulum 53.79 53.49
KRH50513 Soybean vacuole 53.97 53.09
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 53.97 52.9
KRG89471 Soybean mitochondrion 53.6 52.06
KRH57767 Soybean cytosol, peroxisome 33.64 50.84
KRH57766 Soybean extracellular 17.38 50.0
KRH38383 Soybean cytosol, extracellular, peroxisome 45.66 47.23
KRH18028 Soybean cytosol 27.17 46.67
KRH04081 Soybean extracellular 51.02 46.62
KRG99235 Soybean mitochondrion 10.72 46.4
KRH57349 Soybean endoplasmic reticulum 51.2 46.4
KRH56354 Soybean extracellular 49.17 45.01
KRH62611 Soybean nucleus 48.98 44.76
KRH46577 Soybean mitochondrion 51.57 43.8
KRG93978 Soybean extracellular 24.95 43.27
KRG92132 Soybean extracellular 47.69 43.14
KRH34656 Soybean extracellular 46.77 42.17
KRG92134 Soybean cytosol, endoplasmic reticulum, extracellular 45.1 40.46
Protein Annotations
EntrezGene:100783077Gene3D:2.60.40.420MapMan:50.1.10EMBL:ACUP02010788EMBL:ACUP02010789InterPro:Cu-oxidase
InterPro:Cu-oxidase_2InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CuRO_3_AO-likeInterPro:CupredoxinEnsemblPlantsGene:GLYMA_17G261500
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491
GO:GO:0016722GO:GO:0030312GO:GO:0055114UniProt:I1MY65InterPro:IPR008972EnsemblPlants:KRH06000
ProteinID:KRH06000ProteinID:KRH06000.1PFAM:PF00394PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709
PANTHER:PTHR11709:SF90SUPFAM:SSF49503SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000233EC46SEG:seg
Description
hypothetical protein
Coordinates
chr17:-:41526296..41534710
Molecular Weight (calculated)
59963.1 Da
IEP (calculated)
8.933
GRAVY (calculated)
-0.190
Length
541 amino acids
Sequence
(BLAST)
001: MTLNIAALAV LCISVFGIAV VAEDPYRFFT WNVTYGDIYP LGVRQQGILI NGQFPGPDIH SVTNDNLIIN VFNSLDQPFL LSWNGVQQRR NSFEDGVLGT
101: TCPIPAGGNF TYILQVKDQI GSFYYFPSLA FHKAAGGFGG IRILSRPRIP VPFDDPAGDY TVLIGDWYKL NHTDLKSQLD SGRKLPLPDG ILINGRGSNG
201: AYLNVEQGKT YRLRISNVGL ENSLNLRIQN HKLKLVEVEG THTLQTTYSS LDVHVGQSYS VLVTADQPAQ DYYIVVSSRF TSTVLTTTGI LRYSNSAGPV
301: SGPPPGGPTI QIDWSLNQAR SIRTNLTASG PRPNPQGSYH YGLINTTRTI ILSGSPGIVN GKQRYAINSV SYVAPDTPLK LADYFKIPGV FRVGSISDRP
401: TGGGIYLDTS VLQTDYRTFV EFVFQNDEDI IQSYHLDGYS FFVVGMDGGQ WTPASRNTYN LRDAVSRSTT QVYPKSWTAI YIALDNVGMW NLRSEFWARQ
501: YLGQQFYMRV YTTSTSIRDE YPVPKNALLC GRASGRHTRP L
Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
Arabidopsis Description
sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.