Factsheet for Bra034943.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35790	Canola	extracellular	99.82	99.82
CDY67479	Canola	extracellular	99.45	99.63
AT1G41830.1	Thale cress	extracellular	96.13	96.13
Bra015781.1-P	Field mustard	extracellular	83.39	83.55
Bra008241.1-P	Field mustard	extracellular	82.1	81.2
KRH60965	Soybean	nucleus	81.18	80.44
KRH06000	Soybean	endoplasmic reticulum	79.89	80.04
KRH51639	Soybean	nucleus	80.63	79.89
KRH17495	Soybean	nucleus	78.78	78.06
Solyc04g082140.2.1	Tomato	extracellular	76.75	77.04
PGSC0003DMT400025805	Potato	extracellular	76.38	76.67
VIT_18s0001g00470.t01	Wine grape	extracellular	76.2	76.34
Solyc12g094460.1.1	Tomato	extracellular	74.72	74.45
PGSC0003DMT400075398	Potato	extracellular	73.99	73.71
Solyc12g094470.1.1	Tomato	nucleus	70.48	70.35
PGSC0003DMT400075620	Potato	extracellular	70.11	69.98
Bra025818.1-P	Field mustard	extracellular	69.0	67.88
Bra013582.1-P	Field mustard	extracellular	66.97	67.1
Bra022513.1-P	Field mustard	extracellular	62.18	61.38
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	67.34	57.12
Bra037137.1-P	Field mustard	extracellular	56.27	56.38
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	56.46	56.15
Bra030849.1-P	Field mustard	cytosol	16.79	55.15
Bra036800.1-P	Field mustard	extracellular	54.98	55.08
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	55.17	54.17
Bra001504.1-P	Field mustard	extracellular	54.61	53.72
Bra001503.1-P	Field mustard	extracellular, plasma membrane	54.8	53.51
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	54.61	53.43
Bra039389.1-P	Field mustard	plasma membrane	51.11	53.27
Bra038001.1-P	Field mustard	extracellular, vacuole	54.06	52.79
Bra017796.1-P	Field mustard	extracellular	52.4	52.59
Bra030850.1-P	Field mustard	plasma membrane	52.95	52.28
Bra032154.1-P	Field mustard	extracellular	51.48	51.76
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	52.03	50.9
Bra034680.1-P	Field mustard	extracellular, plasma membrane	51.66	50.63
KRH57767	Soybean	cytosol, peroxisome	32.29	48.88
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	43.73	48.07
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	49.63	45.21
Bra018479.1-P	Field mustard	plasma membrane	48.71	45.05
Bra000773.1-P	Field mustard	extracellular	48.34	44.79
Bra002824.1-P	Field mustard	cytosol	8.67	44.34
Bra029171.1-P	Field mustard	extracellular	47.79	44.27
Bra022551.1-P	Field mustard	plasma membrane	47.79	43.38
Bra013877.1-P	Field mustard	plasma membrane	46.49	42.21
Bra034914.1-P	Field mustard	extracellular	5.9	41.03
Bra011721.1-P	Field mustard	mitochondrion, plastid	50.74	23.19

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	EnsemblPlantsGene:Bra034943	EnsemblPlants:Bra034943.1	EnsemblPlants:Bra034943.1-P	InterPro:Cu-oxidase
InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016020
GO:GO:0016491	GO:GO:0030312	GO:GO:0048046	GO:GO:0055114	InterPro:IPR008972	UniProt:M4F1J7
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF90	SUPFAM:SSF49503
SignalP:SignalP-noTM	UniParc:UPI0002547085	:	:	:	:

Description

AT1G41830 (E=4e-315) SKS6 | SKS6 (SKU5-SIMILAR 6); pectinesterase

Coordinates

chrA08:+:5010551..5017617

Molecular Weight (calculated)

60390.9 Da

IEP (calculated)

9.861

GRAVY (calculated)

-0.256

Length

542 amino acids

Sequence
(BLAST)

001: MMAVGRSGGT VLLLCYSFFA LVTAESPYRF FDWNVTYGDI YPLGVRQQGI LINGQFPGPD IHSVTNDNLI INVHNSLDEP FLISWNGVQN RRNSYVDGMY
101: GTTCPIPPRT NYTYILQVKD QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KSNHTDLKAR LDRGRKLPSP DGILINGRSN
201: GATLNVEQGK TYRLRISNVG LQNSLNFRIQ NHRMKLVEVE GTHTMQTMFS SLDVHVGQSY SVLITADQSP RDYYVVASSR FTGKIITTTG ILRYSGSSTS
301: ASGPIPGGPT IQIDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI NGKQRYGINS VSFVPADTPL KLADFFKISG VYKINSISDK
401: PTGGGLYLDT SVLQVDYRTF IEIVFENKEN IVQSYHLNGY SFWVVGMDGG QWNTGSRNGY NLRDAVSRST VQVYPKSWTA IYIALDNVGM WNLRSEFWAR
501: QYLGQQLYLR VFTTSTSLRD EYPIPKNSRL CGRAKGRHTR PL

Best Arabidopsis Sequence Match ( AT1G41830.1 )
(BLAST)

001: MMAVGRSGGT ILLFCLSFFA AVTAESPYRF FDWNVTYGDI YPLGVRQQGI LINGQFPGPD IHSVTNDNLI INVHNSLDEP FLISWNGVQN RRNSYVDGMY
101: GTTCPIPPRS NYTYILQVKD QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KFNHTDLKSR LDRGRKLPSP DGILINGRSN
201: GATLNVEQGK TYRLRISNVG LQDSLNFRIQ NHRMKLVEVE GTHTLQTMFS SLDVHVGQSY SVLITADQSP RDYYVVVSSR FTDKIITTTG VLRYSGSSTP
301: ASGPIPGGPT IQVDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI NGKQRYGVNS VSFVPADTPL KLADFFKISG VYKINSISDK
401: PTYGGLYLDT SVLQVDYRTF IEIVFENQED IVQSYHLNGY SFWVVGMDGG QWKTGSRNGY NLRDAVSRST VQVYPKSWTA IYIALDNVGM WNLRSEFWAR
501: QYLGQQLYLR VFTSSTSLRD EYPIPKNSRL CGRARGRHTR PL

Arabidopsis Description

SKS6SKS6 [Source:UniProtKB/TrEMBL;Acc:A0A178W7S3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.