Factsheet for VIT_18s0001g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60965	Soybean	nucleus	84.47	83.55
KRH51639	Soybean	nucleus	84.29	83.36
KRH06000	Soybean	endoplasmic reticulum	83.18	83.18
CDX87633	Canola	extracellular	82.07	82.07
Bra015781.1-P	Field mustard	extracellular	82.07	82.07
CDX73238	Canola	extracellular	81.89	81.89
KRH17495	Soybean	nucleus	82.62	81.72
VIT_03s0038g03570.t01	Wine grape	extracellular	81.33	81.18
AT1G76160.1	Thale cress	extracellular	80.96	80.96
Bra008241.1-P	Field mustard	extracellular	80.59	79.56
CDY55201	Canola	extracellular	80.59	79.42
CDY68834	Canola	extracellular, vacuole	80.59	79.42
Solyc04g082140.2.1	Tomato	extracellular	78.56	78.7
PGSC0003DMT400025805	Potato	extracellular	78.56	78.7
VIT_12s0059g00770.t01	Wine grape	extracellular	78.37	78.37
VIT_10s0116g01610.t01	Wine grape	extracellular	76.53	76.67
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	17.38	76.42
CDY67479	Canola	extracellular	76.34	76.34
CDY35790	Canola	extracellular	76.34	76.2
Bra034943.1-P	Field mustard	extracellular	76.34	76.2
AT1G41830.1	Thale cress	extracellular	76.16	76.01
Solyc12g094460.1.1	Tomato	extracellular	73.38	72.98
PGSC0003DMT400075398	Potato	extracellular	73.38	72.98
Solyc12g094470.1.1	Tomato	nucleus	71.72	71.45
AT1G21850.1	Thale cress	extracellular	72.64	71.32
PGSC0003DMT400075620	Potato	extracellular	71.53	71.27
AT1G21860.1	Thale cress	extracellular	69.5	69.89
CDY31468	Canola	extracellular	69.13	67.88
Bra025818.1-P	Field mustard	extracellular	67.65	66.42
VIT_00s0253g00040.t01	Wine grape	extracellular	62.85	63.43
CDY29530	Canola	plastid	62.29	55.61
VIT_00s1309g00010.t01	Wine grape	vacuole	55.64	54.73
VIT_00s1643g00010.t01	Wine grape	vacuole	55.64	54.73
KRH57767	Soybean	cytosol, peroxisome	33.46	50.56
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	55.08	49.58
VIT_13s0019g05180.t01	Wine grape	cytosol	45.47	46.86
VIT_02s0154g00080.t01	Wine grape	extracellular	51.02	46.7
VIT_07s0141g00540.t01	Wine grape	extracellular	50.46	45.88
VIT_16s0022g00680.t01	Wine grape	plasma membrane	49.91	45.61

Protein Annotations

EntrezGene:100252389	wikigene:100252389	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:AM482639	ProteinID:CAN83942
ProteinID:CAN83942.1	ProteinID:CBI18890	ProteinID:CBI18890.3	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	UniProt:E0CQT6	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722
GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	EntrezGene:LOC100252389	wikigene:LOC100252389	PFAM:PF00394
PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF90	SUPFAM:SSF49503	SignalP:SignalP-noTM
TIGR:TC58114	UniParc:UPI00015C8175	ArrayExpress:VIT_18s0001g00470	EnsemblPlantsGene:VIT_18s0001g00470	EnsemblPlants:VIT_18s0001g00470.t01	unigene:Vvi.2108
RefSeq:XP_002285913	RefSeq:XP_002285913.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:1351342..1356940

Molecular Weight (calculated)

60140.4 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.157

Length

541 amino acids

Sequence
(BLAST)

001: MALNSFRAFL SIFSLLFTIV AAEDPYRFFT WNVTFGDIYP LGVRQQGILI NGQFPGPDIY SVTNDNLIIN VYNSLTEPFL LSWSGVQQRR NSYEDGVYGT
101: TCPIPPGRNF TYILQVKDQI GSFFYFPSLD FHKAAGGFGG IRILSRPRIP VPFPDPAGDI TVLIGDWYKA NHTTLKAILD RGKKLHFPDG ILINGRGPNG
201: VSFTVEQGKT YRFRISNVGL QNSLNFRIQD HKMVLVEVEG THTLQTTYSS LDVHVGQSYS VLVTADQPAQ DFYIVVSTRF TSQVLTTTGI LRYSNSAGPV
301: SGPPPGGPTI QIDWSLNQAR SIRTNLTASG PRPNPQGSYH YGMITTSRTI RLASSAGQVN GKQRYAVNSV SYVPGDTPLK VADFFKIGGV FRVGSISDNP
401: TGGGVYLDTS VMGADFRAFV EIVFENPEDI IQSWHIDGYS FFVVGMDGGL WTANSRNQYN LRDAVARSTT QVYPKSWTAI YVALDNVGMW NVRSEFWARQ
501: YLGQQFYLRV YSPVESIRDE FPIPKNALLC GKASGRRTRP L

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.