Factsheet for VIT_00s0253g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28523	Soybean	extracellular	77.8	77.65
KRH76937	Soybean	endoplasmic reticulum	78.17	77.59
KRH57764	Soybean	cytosol, extracellular, plastid	60.26	76.0
Solyc02g065170.2.1	Tomato	nucleus	75.19	74.77
Solyc02g090360.2.1	Tomato	extracellular	75.0	74.72
PGSC0003DMT400002004	Potato	extracellular	75.0	74.58
Bra037137.1-P	Field mustard	extracellular	75.19	74.49
CDY18626	Canola	extracellular	75.19	74.49
KRH04707	Soybean	endoplasmic reticulum	75.19	74.49
CDX81353	Canola	extracellular	74.81	74.12
CDY43557	Canola	extracellular	73.88	73.2
AT5G66920.1	Thale cress	extracellular, plasma membrane, vacuole	74.44	73.08
Bra036800.1-P	Field mustard	extracellular	73.69	73.01
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	73.88	72.66
CDY68812	Canola	cytosol, peroxisome	60.45	72.65
CDY01453	Canola	extracellular, golgi	73.51	72.29
CDY12788	Canola	extracellular	71.83	70.9
GSMUA_Achr6P34670_001	Banana	extracellular	70.34	70.86
PGSC0003DMT400025973	Potato	extracellular	74.63	70.3
GSMUA_Achr10P...	Banana	extracellular	70.34	68.8
HORVU2Hr1G062590.3	Barley	extracellular	64.37	63.89
VIT_12s0059g00770.t01	Wine grape	extracellular	63.99	63.4
TraesCS2D01G259100.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	64.18	63.24
VIT_10s0116g01610.t01	Wine grape	extracellular	63.62	63.15
Os07t0119400-01	Rice	extracellular	64.18	63.12
TraesCS2B01G277200.1	Wheat	extracellular	64.18	62.89
TraesCS2A01G264900.1	Wheat	extracellular	63.81	62.87
VIT_18s0001g00470.t01	Wine grape	extracellular	63.43	62.85
VIT_03s0038g03570.t01	Wine grape	extracellular	62.69	61.99
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	67.91	60.57
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	13.62	59.35
OQU88350	Sorghum	extracellular	61.19	59.31
Zm00001d018696_P001	Maize	extracellular	60.63	55.84
VIT_00s1643g00010.t01	Wine grape	vacuole	55.41	54.0
VIT_00s1309g00010.t01	Wine grape	vacuole	55.41	54.0
VIT_13s0019g05180.t01	Wine grape	cytosol	47.01	48.0
VIT_07s0141g00540.t01	Wine grape	extracellular	49.63	44.71
VIT_02s0154g00080.t01	Wine grape	extracellular	48.69	44.16
VIT_16s0022g00680.t01	Wine grape	plasma membrane	48.51	43.92

Protein Annotations

EntrezGene:100249552	wikigene:100249552	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:AM466085	ProteinID:CAN72538
ProteinID:CAN72538.1	ProteinID:CCB45145	ProteinID:CCB45145.1	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	UniProt:F6GYV9	EMBL:FN594975	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	EntrezGene:LOC100249552	wikigene:LOC100249552
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF26	SUPFAM:SSF49503
SignalP:SignalP-noTM	TIGR:TC64420	TMHMM:TMhelix	UniParc:UPI00019860EA	ArrayExpress:VIT_00s0253g00040	EnsemblPlantsGene:VIT_00s0253g00040
EnsemblPlants:VIT_00s0253g00040.t01	unigene:Vvi.16354	RefSeq:XP_002270831	RefSeq:XP_002270831.1	:	:

Description

No Description!

Coordinates

chrUn:+:17736901..17740780

Molecular Weight (calculated)

60147.6 Da

IEP (calculated)

9.412

GRAVY (calculated)

-0.238

Length

536 amino acids

Sequence
(BLAST)

001: MMRKAVLLHL ICVLLGVFLV NGEDPYKYYT WTVTYGTISP LGVPQQVILI NGQFPGPALE VVTNDNIILD LINKLDQPFL LTWNGIKQRK NSWQDGVLGT
101: NCPIPPNSNY TYKFQTKDQI GTFTYFPSTL FHKAAGGFGA INVYERPRIP IPFPDPAGDF TLLVGDWYKT SHKTLQQTLD SGKPLPFPDG VLINGQTSSS
201: FSGDQGKTYM FRISNVGLST SINFRIQGHT MKLVEVEGSH TLQNTYDSLD VHVGQSIAVL VTLDQLPKDY YIVASTRFTK QILTATAVLH YTNSHTPVSG
301: PVPAGPTYQI HWSMKQARTY RWNLTASAAR PNPQGSFHYG KITPSRTIML VNSAPRLNGK QRYAVNGVSY INADTPLKLA DYFNIPGVFS VNSIQDLPSG
401: GSSFLSTSVM AANHHDFIEV VFQNNENTIQ SWHLDGYDFW VVGYGFGQWT PARRKSYNLI DALTRHTAQV YPRSWTTIWV SLDNQGMWNM RSAVWERQYL
501: GQQFYLRVFN PVHSPANEYD IPKNALLCGK AIGRHP

Best Arabidopsis Sequence Match ( AT5G66920.1 )
(BLAST)

001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV

Arabidopsis Description

sks17Sks17 [Source:UniProtKB/TrEMBL;Acc:A0A178UJS3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.