Factsheet for Solyc02g065170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002004	Potato	extracellular	98.14	98.14
Solyc02g090360.2.1	Tomato	extracellular	84.42	84.57
KRH76937	Soybean	endoplasmic reticulum	75.88	75.74
VIT_00s0253g00040.t01	Wine grape	extracellular	74.77	75.19
KRH28523	Soybean	extracellular	74.77	75.05
KRH57764	Soybean	cytosol, extracellular, plastid	58.07	73.65
KRH04707	Soybean	endoplasmic reticulum	73.47	73.2
GSMUA_Achr6P34670_001	Banana	extracellular	71.43	72.37
CDY18626	Canola	extracellular	71.8	71.53
Bra037137.1-P	Field mustard	extracellular	71.8	71.53
CDX81353	Canola	extracellular	71.43	71.16
CDY68812	Canola	cytosol, peroxisome	58.63	70.85
CDY43557	Canola	extracellular	69.94	69.69
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	70.32	69.54
Bra036800.1-P	Field mustard	extracellular	69.76	69.5
CDY01453	Canola	extracellular, golgi	69.94	69.17
AT5G66920.1	Thale cress	extracellular, plasma membrane, vacuole	69.76	68.86
CDY12788	Canola	extracellular	69.2	68.69
GSMUA_Achr10P...	Banana	extracellular	69.76	68.61
HORVU2Hr1G062590.3	Barley	extracellular	63.82	63.7
TraesCS2D01G259100.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	63.82	63.24
TraesCS2B01G277200.1	Wheat	extracellular	64.01	63.07
Os07t0119400-01	Rice	extracellular	63.64	62.94
TraesCS2A01G264900.1	Wheat	extracellular	63.27	62.68
OQU88350	Sorghum	extracellular	62.34	60.76
Solyc02g080670.2.1	Tomato	nucleus	61.41	60.4
Solyc01g111970.2.1	Tomato	extracellular	59.93	60.26
Solyc07g052230.2.1	Tomato	extracellular	59.18	59.4
Solyc04g082140.2.1	Tomato	extracellular	59.0	58.89
Solyc07g052240.2.1	Tomato	nucleus	59.18	58.75
Zm00001d018696_P001	Maize	extracellular	62.52	57.9
Solyc12g094460.1.1	Tomato	extracellular	57.88	57.35
Solyc12g094470.1.1	Tomato	nucleus	56.59	56.17
Solyc02g080700.1.1	Tomato	cytosol	10.2	55.56
Solyc03g063150.2.1	Tomato	unclear	52.88	51.26
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	51.95	50.27
Solyc05g055710.2.1	Tomato	extracellular	42.3	50.22
Solyc05g055720.1.1	Tomato	nucleus	8.35	50.0
Solyc11g008860.1.1	Tomato	extracellular	51.39	49.91
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	50.83	49.46
Solyc05g055490.1.1	Tomato	extracellular	48.98	48.26
Solyc09g055930.2.1	Tomato	extracellular	51.58	47.6
Solyc03g083900.2.1	Tomato	extracellular	49.17	44.76
Solyc04g081520.1.1	Tomato	extracellular	44.9	44.73
Solyc08g079090.2.1	Tomato	extracellular	48.05	43.97
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	48.05	35.38

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like
InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506
GO:GO:0016491	GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	UniProt:K4B6V2
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF26	SUPFAM:SSF49503
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g065170.2	EnsemblPlants:Solyc02g065170.2.1	UniParc:UPI0002768A1F	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:36333001..36336931

Molecular Weight (calculated)

60218.0 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.187

Length

539 amino acids

Sequence
(BLAST)

001: MGKLALFHLL CGILIFWAVS VVKAEDPYKY FTWTATYGMA SPLGTPQQVI LINGQFPGPR LDLVTNDNIV LNLINKLDEP LLLTWNGIKQ RKNSWQDGVL
101: GTNCPIPPNR NYIYKFQPKD QIGSYTYFPS TQLHRAAGGF GVLNVYARSV IPVPYAKPAG DFSLLIGDWY KTSHKVLRQI LDSGKSLPFP DGLLINGQKQ
201: STFTGDQGKT YMFRISNVGL KTTINFRIQG HKMKLVEVEG SHVIQNLYDS FDVHVGQSLS ILVTLDQSPK DYYIVASTRF TTTVLTSTSV LHYTNSQTPV
301: SGPVPAAPVN QFQWSLMQAR TIRWNLTSNA ARPNPQGSFH YGKITPSRTI LLANSAPLIN GKQRYAVNGI SYINPDTPLK LADHFNIPGV FTLDSIRSAP
401: TADSPHLATA VLPSSLHEFL EIVFQNNEDT MQSWHLDGYD FWVVGFGSGT WTQASRKGYN LVDALTRHTT QVYPKSWTAI YVSLDNQGMW NLRSAMWDRQ
501: YLGQQVYLRV YNPTASLANE YDIPTNALLC GKAAALRHP

Best Arabidopsis Sequence Match ( AT5G66920.1 )
(BLAST)

001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV

Arabidopsis Description

sks17Sks17 [Source:UniProtKB/TrEMBL;Acc:A0A178UJS3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.