CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57764	Soybean	cytosol, extracellular, plastid	73.75	93.88
KRH76937	Soybean	endoplasmic reticulum	82.26	82.41
KRH28523	Soybean	extracellular	81.7	82.31
VIT_00s0253g00040.t01	Wine grape	extracellular	74.49	75.19
Solyc02g090360.2.1	Tomato	extracellular	73.94	74.35
CDX81353	Canola	extracellular	73.57	73.57
CDY18626	Canola	extracellular	73.57	73.57
Solyc02g065170.2.1	Tomato	nucleus	73.2	73.47
Bra037137.1-P	Field mustard	extracellular	73.38	73.38
PGSC0003DMT400002004	Potato	extracellular	72.64	72.91
CDY68812	Canola	cytosol, peroxisome	59.89	72.65
CDY43557	Canola	extracellular	71.9	71.9
Bra036800.1-P	Field mustard	extracellular	71.72	71.72
CDY01453	Canola	extracellular, golgi	72.09	71.56
AT5G66920.1	Thale cress	extracellular, plasma membrane, vacuole	72.09	71.43
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	71.72	71.19
CDY12788	Canola	extracellular	70.61	70.35
PGSC0003DMT400025973	Potato	extracellular	73.57	69.95
GSMUA_Achr6P34670_001	Banana	extracellular	67.65	68.8
GSMUA_Achr10P...	Banana	extracellular	67.47	66.61
HORVU2Hr1G062590.3	Barley	extracellular	64.14	64.26
TraesCS2D01G259100.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	64.51	64.15
TraesCS2B01G277200.1	Wheat	extracellular	64.51	63.8
TraesCS2A01G264900.1	Wheat	extracellular	64.14	63.79
KRH04708	Soybean	endoplasmic reticulum	64.14	63.79
KRH57766	Soybean	extracellular	22.0	63.3
Os07t0119400-01	Rice	extracellular	63.22	62.75
KRH51114	Soybean	endoplasmic reticulum	60.63	59.96
OQU88350	Sorghum	extracellular	61.18	59.86
KRH02049	Soybean	nucleus	60.63	59.74
KRH26769	Soybean	endoplasmic reticulum	58.41	58.96
KRH57767	Soybean	cytosol, peroxisome	39.0	58.94
KRH25361	Soybean	mitochondrion, nucleus	57.3	57.73
KRH56153	Soybean	mitochondrion, nucleus	57.3	57.73
KRH60965	Soybean	nucleus	58.23	57.59
KRH29100	Soybean	nucleus	58.23	57.59
KRH06000	Soybean	endoplasmic reticulum	57.49	57.49
KRH51639	Soybean	nucleus	58.04	57.4
KRH17495	Soybean	nucleus	57.67	57.04
Zm00001d018696_P001	Maize	extracellular	61.18	56.87
KRH24127	Soybean	nucleus	57.12	56.8
KRH11453	Soybean	extracellular	45.47	53.95
KRH31599	Soybean	extracellular	54.16	53.08
KRH50513	Soybean	vacuole	52.87	52.0
KRG89471	Soybean	mitochondrion	53.42	51.89
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	52.5	51.45
KRH18028	Soybean	cytosol	26.8	46.03
KRH38383	Soybean	cytosol, extracellular, peroxisome	43.62	45.12
KRH04081	Soybean	extracellular	48.43	44.26
KRH57349	Soybean	endoplasmic reticulum	48.24	43.72
KRH46577	Soybean	mitochondrion	51.02	43.33
KRH56354	Soybean	extracellular	46.77	42.81
KRH62611	Soybean	nucleus	46.4	42.4
KRG93978	Soybean	extracellular	24.4	42.31
KRG92132	Soybean	extracellular	46.4	41.97
KRG99235	Soybean	mitochondrion	9.61	41.6
KRH34656	Soybean	extracellular	44.92	40.5
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	42.88	38.47

Protein Annotations

EntrezGene:100809971	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02010484	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_17G180400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312
GO:GO:0055114	UniProt:I1MW17	InterPro:IPR008972	EnsemblPlants:KRH04707	ProteinID:KRH04707	ProteinID:KRH04707.1
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF26	SUPFAM:SSF49503
SignalP:SignalP-noTM	UniParc:UPI000233F1FD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:20487778..20491962

Molecular Weight (calculated)

60336.5 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.241

Length

541 amino acids

Sequence
(BLAST)

001: MGSTSLLHLL LGVVLALLSV SLVEGEDAYK YYTWTVTYGI LSPLGSPQQV VLIDGQFPGP QLDLVTNENV VLNLVNKLDE PFLLTWNGIK QRKNSWQDGV
101: LGTNCPIPPN SNYTYKFQVK DQIGTYTYFP STSLHKAAGG FGGLNVYHRS VIPVPYPYPD GDFTLLIGDW YKTNHKVLRE SLDSGKSLAF PDGLLINGQA
201: HTTINGDQGK TYMFRISNVG MSTSINFRIQ GHPLKLVEIE GSHIVQNTYD TLDVHVGQSA AVLVTLNQPP KDYYIVASTR FSRKVLTATA VLHYSNSNSP
301: ASGPLPSPPI YQYHWSVKQA RTYRWNLTAN AARPNPQGSY HYGKITPTKT IVLSNSAPLI NGKLRYAVNK VSYVNSDTPL KLADYFNIPG IYSVDSIQTL
401: PSESTPASIA TSVVPTSLHD FIEVVFQNNE NAMQSWHLDG YDFWVVGYGF GQWTPAKRRT YNLVDALTRH TTQVYPNAWT TILVSLDNQG MWNLRSAIWE
501: RQYLGQQLYL RVWTSERSLA NEYDIPNNAL LCGKAVGHNN P

Best Arabidopsis Sequence Match ( AT5G66920.1 )
(BLAST)

001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV

Arabidopsis Description

sks17Sks17 [Source:UniProtKB/TrEMBL;Acc:A0A178UJS3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.