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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH28523 Soybean extracellular 96.85 97.39
KRH57764 Soybean cytosol, extracellular, plastid 65.19 82.82
KRH04707 Soybean endoplasmic reticulum 82.41 82.26
VIT_00s0253g00040.t01 Wine grape extracellular 77.59 78.17
Solyc02g090360.2.1 Tomato extracellular 76.11 76.39
Solyc02g065170.2.1 Tomato nucleus 75.74 75.88
PGSC0003DMT400002004 Potato extracellular 75.37 75.51
Bra037137.1-P Field mustard extracellular 72.78 72.64
CDY18626 Canola extracellular 72.78 72.64
CDX81353 Canola extracellular 72.59 72.46
CDY68812 Canola cytosol, peroxisome 59.63 72.2
PGSC0003DMT400025973 Potato extracellular 75.74 71.88
CDY01453 Canola extracellular, golgi 72.04 71.38
AT5G66920.1 Thale cress extracellular, plasma membrane, vacuole 72.04 71.25
Bra012117.1-P Field mustard extracellular, golgi, vacuole 71.85 71.19
CDY43557 Canola extracellular 71.3 71.16
Bra036800.1-P Field mustard extracellular 71.11 70.98
CDY12788 Canola extracellular 70.37 69.98
GSMUA_Achr6P34670_001 Banana extracellular 67.22 68.23
GSMUA_Achr10P... Banana extracellular 68.7 67.7
KRH57766 Soybean extracellular 22.78 65.43
KRH04708 Soybean endoplasmic reticulum 65.37 64.89
TraesCS2D01G259100.1 Wheat endoplasmic reticulum, extracellular, mitochondrion 65.0 64.52
HORVU2Hr1G062590.3 Barley extracellular 64.44 64.44
TraesCS2B01G277200.1 Wheat extracellular 65.0 64.17
TraesCS2A01G264900.1 Wheat extracellular 64.26 63.79
Os07t0119400-01 Rice extracellular 64.07 63.49
OQU88350 Sorghum extracellular 62.96 61.48
KRH51114 Soybean endoplasmic reticulum 60.74 59.96
KRH57767 Soybean cytosol, peroxisome 39.44 59.5
KRH02049 Soybean nucleus 60.37 59.38
KRH26769 Soybean endoplasmic reticulum 58.52 58.96
KRH29100 Soybean nucleus 59.07 58.32
KRH06000 Soybean endoplasmic reticulum 58.33 58.23
KRH56153 Soybean mitochondrion, nucleus 57.78 58.1
KRH24127 Soybean nucleus 58.52 58.09
KRH51639 Soybean nucleus 58.7 57.95
KRH17495 Soybean nucleus 58.7 57.95
KRH25361 Soybean mitochondrion, nucleus 57.59 57.91
KRH60965 Soybean nucleus 58.52 57.77
Zm00001d018696_P001 Maize extracellular 61.85 57.39
KRH11453 Soybean extracellular 46.67 55.26
KRH31599 Soybean extracellular 54.07 52.9
KRH50513 Soybean vacuole 51.85 50.91
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 51.67 50.54
KRG89471 Soybean mitochondrion 52.04 50.45
KRH18028 Soybean cytosol 26.67 45.71
KRH38383 Soybean cytosol, extracellular, peroxisome 43.89 45.32
KRH04081 Soybean extracellular 49.07 44.76
KRH57349 Soybean endoplasmic reticulum 48.7 44.05
KRH56354 Soybean extracellular 47.04 42.98
KRH62611 Soybean nucleus 46.67 42.57
KRG92132 Soybean extracellular 47.04 42.47
KRG99235 Soybean mitochondrion 9.81 42.4
KRH46577 Soybean mitochondrion 49.81 42.23
KRG93978 Soybean extracellular 24.26 41.99
KRH34656 Soybean extracellular 45.19 40.67
KRG92134 Soybean cytosol, endoplasmic reticulum, extracellular 42.78 38.31
Protein Annotations
EntrezGene:100782355Gene3D:2.60.40.420MapMan:50.1.10EMBL:ACUP02000646InterPro:Cu-oxidaseInterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CupredoxinEnsemblPlantsGene:GLYMA_01G183100GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618GO:GO:0005623GO:GO:0008150
GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491GO:GO:0016722GO:GO:0030312
GO:GO:0055114UniProt:I1J937InterPro:IPR008972ProteinID:KRH76936.1EnsemblPlants:KRH76937ProteinID:KRH76937
ProteinID:KRH76937.1PFAM:PF00394PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709PANTHER:PTHR11709:SF26
SUPFAM:SSF49503SignalP:SignalP-noTMUniParc:UPI0002336FC6:::
Description
hypothetical protein
Coordinates
chr1:-:51843195..51847129
Molecular Weight (calculated)
60382.7 Da
IEP (calculated)
8.935
GRAVY (calculated)
-0.225
Length
540 amino acids
Sequence
(BLAST)
001: MGSTGLLHLI CLVIALVSVS LVQAEDAYKY FTWTVTYGTL YPLASPQQVI LINGQFPGPR LDLVTNENVI LNLINKLDEP FLLTWNGIKQ RKNSWQDGVL
101: GTNCPIPPNS NYTYKFQAKD QIGTYTYFPS TQLHKAAGGF GALNVYHRSV IPIPYPNPDG DFTLLVGDWY KTNHKTLRQT LDSGKSLAFP DGLLINGQAH
201: STFTGNQGKT YMFRISNVGL STSINFRIQG HTLKLVEVEG SHTVQNLYDS LDVHVGQSVA VLVTLNQPPK DYYIVASTRF TETPLTTTAV LHYANSFSSA
301: LGPVPAPPVD KYDFDWSMKQ ARTYRWNLTA NAARPNPQGS FHYGKITPTK VIKLANSAPL INGKLRYAVN SVSYVNPDTP LKLADYFNIP GVFSVNLLQN
401: SPSNGPGYIG TSVLQTSLHD FIEVIFQNNE NTMQSWHLDG YDFWVIGHGF GQWTDASRKT YNLVDALTRH TAQVYPKSWT TILVSLDNQG MWNLRSAIWE
501: RQYLGQQFYL RVWNAQKSLA NEYDIPNNVL LCGKAVGHHP
Best Arabidopsis Sequence Match ( AT5G66920.1 )
(BLAST)
001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV
Arabidopsis Description
sks17Sks17 [Source:UniProtKB/TrEMBL;Acc:A0A178UJS3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.