CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51114	Soybean	endoplasmic reticulum	97.09	97.44
VIT_10s0116g01610.t01	Wine grape	extracellular	76.87	78.15
GSMUA_Achr5P26550_001	Banana	cytosol	18.21	76.92
Bra013582.1-P	Field mustard	extracellular	74.86	75.97
AT4G22010.1	Thale cress	extracellular	74.32	75.42
PGSC0003DMT400042483	Potato	extracellular	74.5	74.77
Solyc02g080670.2.1	Tomato	nucleus	74.32	74.45
KRH26769	Soybean	endoplasmic reticulum	70.13	71.83
KRH11453	Soybean	extracellular	59.38	71.49
TraesCS7B01G359700.1	Wheat	extracellular	69.95	70.85
Os06t0678800-01	Rice	extracellular	69.58	70.48
HORVU7Hr1G105620.1	Barley	extracellular	69.4	70.3
KRH56153	Soybean	mitochondrion, nucleus	68.49	70.02
TraesCS7D01G447200.1	Wheat	extracellular	69.03	69.93
TraesCS7A01G459400.1	Wheat	extracellular	69.22	69.85
KRH25361	Soybean	mitochondrion, nucleus	68.31	69.83
KRH06000	Soybean	endoplasmic reticulum	68.67	69.69
EER97278	Sorghum	extracellular, golgi	69.4	69.53
KRH17495	Soybean	nucleus	69.22	69.47
GSMUA_Achr5P26560_001	Banana	extracellular	43.9	69.45
EER90222	Sorghum	extracellular	69.03	69.41
KRH60965	Soybean	nucleus	69.03	69.29
Zm00001d014366_P002	Maize	extracellular	69.03	69.16
KRH51639	Soybean	nucleus	68.85	69.1
KRH24127	Soybean	nucleus	68.31	68.93
TraesCS2D01G230800.1	Wheat	extracellular	68.31	68.81
TraesCS2A01G224600.1	Wheat	extracellular	68.12	68.62
TraesCS2B01G274800.1	Wheat	vacuole	68.12	68.62
Os07t0510900-01	Rice	extracellular, peroxisome	57.92	68.53
KRH29100	Soybean	nucleus	67.94	68.19
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	68.12	67.88
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	68.31	67.2
KRH57764	Soybean	cytosol, extracellular, plastid	47.18	60.94
KRH28523	Soybean	extracellular	59.56	60.89
KRH04707	Soybean	endoplasmic reticulum	59.74	60.63
KRH76937	Soybean	endoplasmic reticulum	59.38	60.37
KRH04708	Soybean	endoplasmic reticulum	55.92	56.43
Os07t0510833-00	Rice	extracellular	10.2	56.0
KRH57767	Soybean	cytosol, peroxisome	34.97	53.63
KRH31599	Soybean	extracellular	53.55	53.26
KRH57766	Soybean	extracellular	18.21	53.19
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	51.91	51.63
KRG89471	Soybean	mitochondrion	50.64	49.91
KRH50513	Soybean	vacuole	49.91	49.82
KRH18028	Soybean	cytosol	26.96	46.98
KRH38383	Soybean	cytosol, extracellular, peroxisome	44.08	46.27
KRG99235	Soybean	mitochondrion	10.02	44.0
KRH04081	Soybean	extracellular	46.99	43.58
KRH57349	Soybean	endoplasmic reticulum	46.81	43.05
KRH56354	Soybean	extracellular	46.27	42.98
KRG92132	Soybean	extracellular	46.63	42.81
KRH62611	Soybean	nucleus	46.08	42.74
KRH46577	Soybean	mitochondrion	49.54	42.7
KRG93978	Soybean	extracellular	24.04	42.31
KRH34656	Soybean	extracellular	44.81	41.0
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	43.72	39.8
CDX76855	Canola	cytoskeleton, cytosol, extracellular	16.76	36.95

Protein Annotations

EntrezGene:100819758	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02010293	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_17G012300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312
GO:GO:0055114	UniProt:I1MR46	InterPro:IPR008972	EnsemblPlants:KRH02049	ProteinID:KRH02049	ProteinID:KRH02049.1
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF11	SUPFAM:SSF49503
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000233E217	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:950397..955232

Molecular Weight (calculated)

62067.9 Da

IEP (calculated)

9.651

GRAVY (calculated)

-0.300

Length

549 amino acids

Sequence
(BLAST)

001: MRPCKCKCNV LSALILLVTF LFIASSVHCE DPYRYLTWKV TYGDIYPLGV KQQGILINGQ FPGPQIDAVT NDNLIINVYN YLREPFLISW NGLQHRRNSW
101: QDGVYGTNCP IPPGRNLTYA IQVKDQIGSY FYFPSLGMHK AAGAFGGIRI WSRPQIPVPF PSPAGDITIL AGDWFKLDHR RLRRLLENGH NLPFPDGLLI
201: NGRGWNGNTF TVDQGKTYRF RISNVGLTTS INFRIQGHSL KLVEVEGSHT LQNTYSSLDV HLGQSYSVLV TADQPVKDYY MVVSTRFTRR ILTTTSVLHY
301: SYSKTGVSGP VPPGPTLDIA SSVYQARTIR WNLTASGPRP NPQGSYHYGL IKPSRTIMLA NSAPYINGKQ RYAVNGVSYN EPDTPLKLAD YFNIPGVFYV
401: GSIPTYPNGG NNAYLQTSVM GANFHELVEI VFQNWEDSVQ SWHIDGYSFF VVGYGSGQWT ADSRVQYNLR DTVARCTTQV YPRSWTAIYM ALDNVGMWNI
501: RSENWGRQYL GQQLYLRVYT PSKSWRDEYP VPKNALLCGR ASGRRTRPF

Best Arabidopsis Sequence Match ( AT4G22010.1 )
(BLAST)

001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F

Arabidopsis Description

sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.