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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60965 Soybean nucleus 97.62 97.62
KRH06000 Soybean endoplasmic reticulum 86.65 87.62
KRH17495 Soybean nucleus 87.39 87.39
VIT_18s0001g00470.t01 Wine grape extracellular 83.36 84.29
Bra015781.1-P Field mustard extracellular 82.82 83.73
CDX87633 Canola extracellular 82.63 83.55
CDX73238 Canola extracellular 82.63 83.55
CDY55201 Canola extracellular 82.63 82.33
Bra008241.1-P Field mustard extracellular 82.45 82.3
CDY68834 Canola extracellular, vacuole 82.45 82.15
AT1G76160.1 Thale cress extracellular 80.99 81.89
CDY67479 Canola extracellular 79.89 80.78
Solyc04g082140.2.1 Tomato extracellular 79.71 80.74
Bra034943.1-P Field mustard extracellular 79.89 80.63
CDY35790 Canola extracellular 79.89 80.63
PGSC0003DMT400025805 Potato extracellular 79.52 80.56
AT1G41830.1 Thale cress extracellular 78.98 79.7
Solyc12g094460.1.1 Tomato extracellular 76.97 77.39
PGSC0003DMT400075398 Potato extracellular 76.97 77.39
KRH24127 Soybean nucleus 73.86 74.26
KRH29100 Soybean nucleus 73.49 73.49
Solyc12g094470.1.1 Tomato nucleus 71.85 72.38
AT1G21860.1 Thale cress extracellular 71.12 72.3
PGSC0003DMT400075620 Potato extracellular 71.66 72.19
AT1G21850.1 Thale cress extracellular 72.58 72.05
KRH26769 Soybean endoplasmic reticulum 69.47 70.9
CDY31468 Canola extracellular 70.93 70.42
KRH25361 Soybean mitochondrion, nucleus 68.37 69.65
KRH56153 Soybean mitochondrion, nucleus 68.01 69.27
Bra025818.1-P Field mustard extracellular 69.47 68.97
KRH51114 Soybean endoplasmic reticulum 68.92 68.92
KRH02049 Soybean nucleus 69.1 68.85
KRH11453 Soybean extracellular 52.47 62.94
KRH57764 Soybean cytosol, extracellular, plastid 46.44 59.76
KRH76937 Soybean endoplasmic reticulum 57.95 58.7
KRH28523 Soybean extracellular 57.4 58.47
KRH04707 Soybean endoplasmic reticulum 57.4 58.04
CDY29530 Canola plastid 63.62 57.43
KRH31599 Soybean extracellular 54.11 53.62
KRH04708 Soybean endoplasmic reticulum 53.2 53.49
KRH57766 Soybean extracellular 18.1 52.66
KRH50513 Soybean vacuole 52.1 51.82
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 51.92 51.45
KRG89471 Soybean mitochondrion 51.37 50.45
KRH57767 Soybean cytosol, peroxisome 32.91 50.28
KRH38383 Soybean cytosol, extracellular, peroxisome 46.44 48.57
KRH18028 Soybean cytosol 27.61 47.94
KRH04081 Soybean extracellular 50.09 46.28
KRH57349 Soybean endoplasmic reticulum 50.09 45.9
KRH62611 Soybean nucleus 48.81 45.1
KRH56354 Soybean extracellular 48.63 45.01
KRH46577 Soybean mitochondrion 52.29 44.9
KRG92132 Soybean extracellular 48.26 44.15
KRG99235 Soybean mitochondrion 10.05 44.0
KRG93978 Soybean extracellular 25.05 43.91
KRH34656 Soybean extracellular 47.35 43.17
KRG92134 Soybean cytosol, endoplasmic reticulum, extracellular 46.25 41.96
Protein Annotations
EntrezGene:100776222Gene3D:2.60.40.420MapMan:50.1.10EMBL:ACUP02003383InterPro:Cu-oxidaseInterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CuRO_2_AO-likeInterPro:CuRO_3_AO-likeInterPro:CupredoxinEnsemblPlantsGene:GLYMA_06G019800
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491
GO:GO:0016722GO:GO:0030312GO:GO:0055114UniProt:I1K7F4InterPro:IPR008972EnsemblPlants:KRH51639
ProteinID:KRH51639ProteinID:KRH51639.1PFAM:PF00394PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709
PANTHER:PTHR11709:SF90SUPFAM:SSF49503SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000233A601SEG:seg
Description
hypothetical protein
Coordinates
chr6:+:1494230..1501925
Molecular Weight (calculated)
60816.5 Da
IEP (calculated)
9.609
GRAVY (calculated)
-0.188
Length
547 amino acids
Sequence
(BLAST)
001: MPLKLAGVAT VGSLLLCVAI SLFHIAGAED PYRFFNWNIT YGDIYPLGVR QTGILINGQF PGPDIHSVTN DNLIINVFNS LDEPFLLSWN GIQQRRNSFE
101: DGVFGTTCPI PAGKNFTYIL QVKDQIGTFY YFPSLAFHKA AGGFGGIRIL SRPRIPVPFP DPAGDYTVLI GDWYKSNHTT LKARLDRGKK LPFPDGILIN
201: GRGPNGVSFN VEQGKTYRLR ISNVGLQHSL NFRIQNHKMK LVEVEGTHTL QTMYSSLDVH VGQSYSVLVT ADQPAQDYYI VVSTRFSYKV LTTTGVLRYS
301: NSAGPVSGPP PGGPTIQIDW SLNQARSIRT NLTASGPRPN PQGSYHYGMI NTTKTIILAS SAGQVNGKQR YAINSVSYVV PDTPLKLADY FKISGVFRPG
401: SISDRPTGGG IYLDTSVLQA DYRNFVEIVF QNNENIVQSY HLDGYSFFVV GMDGGQWTTA SRNQYNLRDA VARCTTQVYP FSWTAIYIAL DNVGMWNLRS
501: EFWARQYLGQ QLYLRVYTTS TSIRDEFPVP KNAILCGRAS GRHTRPL
Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
Arabidopsis Description
sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.