Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87633 | Canola | extracellular | 91.31 | 91.31 |
| CDX73238 | Canola | extracellular | 91.31 | 91.31 |
| Bra015781.1-P | Field mustard | extracellular | 91.31 | 91.31 |
| CDY68834 | Canola | extracellular, vacuole | 89.65 | 88.34 |
| CDY55201 | Canola | extracellular | 89.46 | 88.16 |
| Bra008241.1-P | Field mustard | extracellular | 89.28 | 88.14 |
| KRH60965 | Soybean | nucleus | 82.81 | 81.9 |
| KRH06000 | Soybean | endoplasmic reticulum | 81.33 | 81.33 |
| AT1G41830.1 | Thale cress | extracellular | 81.33 | 81.18 |
| KRH51639 | Soybean | nucleus | 81.89 | 80.99 |
| VIT_18s0001g00470.t01 | Wine grape | extracellular | 80.96 | 80.96 |
| KRH17495 | Soybean | nucleus | 80.59 | 79.71 |
| PGSC0003DMT400025805 | Potato | extracellular | 78.19 | 78.33 |
| Solyc04g082140.2.1 | Tomato | extracellular | 77.82 | 77.96 |
| AT1G21860.1 | Thale cress | extracellular | 75.23 | 75.65 |
| AT1G21850.1 | Thale cress | extracellular | 75.79 | 74.41 |
| Solyc12g094460.1.1 | Tomato | extracellular | 74.68 | 74.26 |
| PGSC0003DMT400075398 | Potato | extracellular | 73.94 | 73.53 |
| Solyc12g094470.1.1 | Tomato | nucleus | 70.98 | 70.72 |
| PGSC0003DMT400075620 | Potato | extracellular | 70.61 | 70.35 |
| AT4G22010.1 | Thale cress | extracellular | 68.21 | 68.21 |
| AT4G38420.1 | Thale cress | extracellular | 66.17 | 65.21 |
| AT4G28090.1 | Thale cress | extracellular | 59.33 | 58.68 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 55.08 | 54.58 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 55.64 | 54.33 |
| AT4G37160.1 | Thale cress | extracellular | 52.87 | 52.87 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 54.16 | 52.79 |
| AT1G55560.1 | Thale cress | extracellular | 52.87 | 52.09 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 53.05 | 52.09 |
| AT2G23630.2 | Thale cress | extracellular | 51.94 | 51.47 |
| KRH57767 | Soybean | cytosol, peroxisome | 32.16 | 48.6 |
| AT1G75790.1 | Thale cress | extracellular | 47.5 | 47.16 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 50.28 | 46.34 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 48.43 | 44.26 |
| AT4G25240.1 | Thale cress | plasma membrane | 48.06 | 44.14 |
| AT5G48450.1 | Thale cress | extracellular | 48.8 | 42.51 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:843948 | UniProt:A0A178WJJ9 | ProteinID:AAF17645.1 | ProteinID:AEE35804.1 |
| EMBL:AK316846 | ArrayExpress:AT1G76160 | EnsemblPlantsGene:AT1G76160 | RefSeq:AT1G76160 | TAIR:AT1G76160 | RefSeq:AT1G76160-TAIR-G |
| EnsemblPlants:AT1G76160.1 | TAIR:AT1G76160.1 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:Cupredoxin |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0048046 | GO:GO:0055114 | InterPro:IPR008972 |
| RefSeq:NP_177743.1 | ProteinID:OAP18517.1 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005417 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF90 | UniProt:Q9SGR6 | SUPFAM:SSF49503 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0000048491 | Symbol:sks5 | : | : | : |
Description
sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
Coordinates
chr1:-:28577842..28581315
Molecular Weight (calculated)
60044.0 Da
IEP (calculated)
8.574
GRAVY (calculated)
-0.236
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.