Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05676 | Canola | extracellular, plasma membrane, vacuole | 83.74 | 87.25 |
| Bra020700.1-P | Field mustard | extracellular, plasma membrane, vacuole | 83.41 | 87.06 |
| CDY48757 | Canola | extracellular, plasma membrane, vacuole | 83.25 | 86.89 |
| PGSC0003DMT400074313 | Potato | extracellular | 67.79 | 72.21 |
| VIT_07s0141g00540.t01 | Wine grape | extracellular | 68.92 | 71.93 |
| Solyc09g055930.2.1 | Tomato | extracellular | 66.99 | 71.23 |
| GSMUA_Achr3P17240_001 | Banana | cytosol | 63.77 | 66.89 |
| KRH46577 | Soybean | mitochondrion | 68.6 | 66.88 |
| TraesCS3A01G085900.1 | Wheat | extracellular | 61.51 | 64.42 |
| TraesCS3B01G101500.1 | Wheat | extracellular | 61.35 | 63.93 |
| EER92264 | Sorghum | extracellular | 60.55 | 63.73 |
| TraesCS3D01G086400.1 | Wheat | extracellular | 61.19 | 63.65 |
| Os01t0100400-01 | Rice | extracellular, plasma membrane, vacuole | 59.26 | 62.06 |
| TraesCS3B01G101200.1 | Wheat | extracellular | 61.51 | 59.87 |
| HORVU3Hr1G015510.2 | Barley | cytosol | 34.14 | 59.38 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 55.88 | 59.11 |
| AT4G25240.1 | Thale cress | plasma membrane | 53.46 | 56.37 |
| Zm00001d029193_P001 | Maize | mitochondrion | 61.19 | 54.99 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 52.01 | 54.56 |
| AT1G41830.1 | Thale cress | extracellular | 43.0 | 49.26 |
| AT1G21860.1 | Thale cress | extracellular | 42.67 | 49.26 |
| AT1G76160.1 | Thale cress | extracellular | 42.51 | 48.8 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 42.51 | 48.35 |
| AT1G55560.1 | Thale cress | extracellular | 42.67 | 48.27 |
| AT4G37160.1 | Thale cress | extracellular | 42.03 | 48.24 |
| AT2G23630.2 | Thale cress | extracellular | 42.03 | 47.8 |
| AT4G38420.1 | Thale cress | extracellular | 42.19 | 47.72 |
| AT4G22010.1 | Thale cress | extracellular | 41.55 | 47.69 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 42.51 | 47.65 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 42.19 | 47.55 |
| AT1G21850.1 | Thale cress | extracellular | 42.03 | 47.37 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 41.87 | 46.85 |
| AT1G75790.1 | Thale cress | extracellular | 39.77 | 45.32 |
| AT4G28090.1 | Thale cress | extracellular | 39.45 | 44.79 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:834900 | ProteinID:AED95672.1 | ArrayExpress:AT5G48450 | EnsemblPlantsGene:AT5G48450 |
| RefSeq:AT5G48450 | TAIR:AT5G48450 | RefSeq:AT5G48450-TAIR-G | EnsemblPlants:AT5G48450.1 | TAIR:AT5G48450.1 | Unigene:At.55432 |
| InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like | InterPro:Cupredoxin | UniProt:F4K1P9 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0016722 | GO:GO:0046658 | GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_199656.2 | PFAM:PF00394 |
| PFAM:PF07731 | PFAM:PF07732 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF58 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | UniParc:UPI0001E930F2 | SEG:seg | Symbol:sks3 | : | : |
Description
sks3SKU5 similar 3 [Source:UniProtKB/TrEMBL;Acc:F4K1P9]
Coordinates
chr5:-:19632791..19635664
Molecular Weight (calculated)
69097.1 Da
IEP (calculated)
9.178
GRAVY (calculated)
-0.197
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCFPPPLWC TSLVVFLSVT GALAADPYVF FDWTVSYLSA SPLGTRQQVI GINGQFPGPI LNVTTNWNVV MNVKNNLDEP LLLTWNGIQH RKNSWQDGVL
101: GTNCPIPSGW NWTYEFQVKD QIGSFFYFPS TNFQRASGGY GGIIVNNRAI IPVPFALPDG DVTLFISDWY TKSHKKLRKD VESKNGLRPP DGIVINGFGP
201: FASNGSPFGT INVEPGRTYR FRVHNSGIAT SLNFRIQNHN LLLVETEGSY TIQQNYTNMD IHVGQSFSFL VTMDQSGSND YYIVASPRFA TSIKASGVAV
301: LRYSNSQGPA SGPLPDPPIE LDTFFSMNQA RSLRLNLSSG AARPNPQGSF KYGQITVTDV YVIVNRPPEM IEGRLRATLN GISYLPPATP LKLAQQYNIS
401: GVYKLDFPKR PMNRHPRVDT SVINGTFKGF VEIIFQNSDT TVKSYHLDGY AFFVVGMDFG LWTENSRSTY NKGDAVARST TQVFPGAWTA VLVSLDNAGM
501: WNLRIDNLAS WYLGQELYLS VVNPEIDIDS SENSVPKNSI YCGRLSPLQK DQAQRVNFSG SQRSIFVTSR GILLALFAIL VNINRLCNTK KILDSTAKAQ
601: TDLSLVETDR ISEKNRDRIS Y
101: GTNCPIPSGW NWTYEFQVKD QIGSFFYFPS TNFQRASGGY GGIIVNNRAI IPVPFALPDG DVTLFISDWY TKSHKKLRKD VESKNGLRPP DGIVINGFGP
201: FASNGSPFGT INVEPGRTYR FRVHNSGIAT SLNFRIQNHN LLLVETEGSY TIQQNYTNMD IHVGQSFSFL VTMDQSGSND YYIVASPRFA TSIKASGVAV
301: LRYSNSQGPA SGPLPDPPIE LDTFFSMNQA RSLRLNLSSG AARPNPQGSF KYGQITVTDV YVIVNRPPEM IEGRLRATLN GISYLPPATP LKLAQQYNIS
401: GVYKLDFPKR PMNRHPRVDT SVINGTFKGF VEIIFQNSDT TVKSYHLDGY AFFVVGMDFG LWTENSRSTY NKGDAVARST TQVFPGAWTA VLVSLDNAGM
501: WNLRIDNLAS WYLGQELYLS VVNPEIDIDS SENSVPKNSI YCGRLSPLQK DQAQRVNFSG SQRSIFVTSR GILLALFAIL VNINRLCNTK KILDSTAKAQ
601: TDLSLVETDR ISEKNRDRIS Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.