Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38959 | Canola | extracellular | 85.9 | 87.01 |
| Bra032154.1-P | Field mustard | extracellular | 85.9 | 87.01 |
| CDX89586 | Canola | mitochondrion | 34.8 | 85.59 |
| AT4G37160.1 | Thale cress | extracellular | 77.84 | 78.56 |
| KRH04708 | Soybean | endoplasmic reticulum | 66.12 | 66.36 |
| KRH57766 | Soybean | extracellular | 21.61 | 62.77 |
| CDX89588 | Canola | cytosol | 31.5 | 62.55 |
| VIT_00s0253g00050.t01 | Wine grape | extracellular, mitochondrion | 67.22 | 61.06 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 60.44 | 60.44 |
| AT4G22010.1 | Thale cress | extracellular | 54.4 | 54.9 |
| AT1G41830.1 | Thale cress | extracellular | 52.2 | 52.58 |
| AT1G76160.1 | Thale cress | extracellular | 51.47 | 51.94 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 52.75 | 51.89 |
| AT1G21860.1 | Thale cress | extracellular | 51.1 | 51.86 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 52.56 | 51.81 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 51.47 | 51.0 |
| AT1G21850.1 | Thale cress | extracellular | 51.28 | 50.82 |
| AT4G38420.1 | Thale cress | extracellular | 50.18 | 49.91 |
| AT1G55560.1 | Thale cress | extracellular | 50.18 | 49.91 |
| AT4G28090.1 | Thale cress | extracellular | 47.25 | 47.17 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 48.35 | 44.97 |
| AT1G75790.1 | Thale cress | extracellular | 44.87 | 44.95 |
| AT4G25240.1 | Thale cress | plasma membrane | 46.15 | 42.78 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 45.6 | 42.06 |
| AT5G48450.1 | Thale cress | extracellular | 47.8 | 42.03 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:816895 | UniProt:A0A1P8B128 | ProteinID:AAC17097.1 | ProteinID:AAM14869.1 |
| ProteinID:AEC07474.1 | ProteinID:ANM62588.1 | ArrayExpress:AT2G23630 | EnsemblPlantsGene:AT2G23630 | RefSeq:AT2G23630 | TAIR:AT2G23630 |
| RefSeq:AT2G23630-TAIR-G | EnsemblPlants:AT2G23630.2 | Unigene:At.50090 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 |
| InterPro:Cupredoxin | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009505 | GO:GO:0009506 | GO:GO:0009791 | GO:GO:0009838 | GO:GO:0009908 | GO:GO:0010227 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_001324736.1 |
| RefSeq:NP_565554.1 | ProteinID:OAP07644.1 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PANTHER:PTHR11709 |
| PANTHER:PTHR11709:SF113 | SUPFAM:SSF49503 | TMHMM:TMhelix | UniParc:UPI000848570D | SEG:seg | Symbol:sks16 |
Description
sks16SKU5 similar 16 [Source:TAIR;Acc:AT2G23630]
Coordinates
chr2:-:10052365..10055427
Molecular Weight (calculated)
61578.4 Da
IEP (calculated)
10.137
GRAVY (calculated)
-0.113
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MLISTMKQKH LLLLGFLLAY CFSSVFVINA EDPYLFFTWT VTYGTRSPLG VPQQVILING QFPGPPIEGV TNNNIVVNVI NKLDEPFLIT WNGIKQRKMS
101: WQDGVLGTNC PIQPKSSWTY HFQLKDQIGT YAYFASTSMH RASGAFGALN VNQRSVIFVP YPKPDADFTL LVSDWYKMGH KELQRRLDSS RALPPPDGLL
201: INGASKGLVF TGQHGKIYRF RISNVGISTS INFRIQGHMM TLVEVEGSHT LQEVYESLDI HVGQSVTVLV TLKAPVKDYF IVASTRFTKP ILTTTGILSY
301: QGSKIRPSHP LPIGPTYHIH WSMKQARTIR LNLTANAARP NPQGSFHYGT IPINRTFVLA NGRAMINGKL RYTVNRVSYV NPATPLKLAD WFNIPGVFNF
401: KTIMNIPTPG PSILGTSVFD VALHEYVEFV FQNNEGSIQS WHLDGTSAYV VGYGSGTWNM AKRRGYNLVD AVSRHTFQVY PMSWTSILVS LDNKGMWNLR
501: SQIWSRRYLG QELYVRVWNN EKSLYTESEP PVNVLFCGKA KHPRLI
101: WQDGVLGTNC PIQPKSSWTY HFQLKDQIGT YAYFASTSMH RASGAFGALN VNQRSVIFVP YPKPDADFTL LVSDWYKMGH KELQRRLDSS RALPPPDGLL
201: INGASKGLVF TGQHGKIYRF RISNVGISTS INFRIQGHMM TLVEVEGSHT LQEVYESLDI HVGQSVTVLV TLKAPVKDYF IVASTRFTKP ILTTTGILSY
301: QGSKIRPSHP LPIGPTYHIH WSMKQARTIR LNLTANAARP NPQGSFHYGT IPINRTFVLA NGRAMINGKL RYTVNRVSYV NPATPLKLAD WFNIPGVFNF
401: KTIMNIPTPG PSILGTSVFD VALHEYVEFV FQNNEGSIQS WHLDGTSAYV VGYGSGTWNM AKRRGYNLVD AVSRHTFQVY PMSWTSILVS LDNKGMWNLR
501: SQIWSRRYLG QELYVRVWNN EKSLYTESEP PVNVLFCGKA KHPRLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.