Factsheet for VIT_00s0253g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69261	Canola	extracellular	61.4	70.02
AT4G37160.1	Thale cress	extracellular	61.9	68.76
CDY42716	Canola	extracellular	61.73	68.7
Bra017796.1-P	Field mustard	extracellular	61.73	68.7
CDX72617	Canola	extracellular	61.73	68.58
Bra032154.1-P	Field mustard	extracellular	61.4	68.46
CDY38959	Canola	extracellular	61.4	68.46
KRH57766	Soybean	extracellular	21.3	68.09
CDX75611	Canola	extracellular	61.23	68.02
CDX89586	Canola	mitochondrion	25.12	68.02
KRH04708	Soybean	endoplasmic reticulum	61.56	68.01
VIT_00s0253g00040.t01	Wine grape	extracellular	60.57	67.91
AT2G23630.2	Thale cress	extracellular	61.06	67.22
VIT_12s0059g00770.t01	Wine grape	extracellular	51.58	57.3
VIT_10s0116g01610.t01	Wine grape	extracellular	50.25	55.93
VIT_03s0038g03570.t01	Wine grape	extracellular	50.42	55.9
VIT_18s0001g00470.t01	Wine grape	extracellular	49.58	55.08
VIT_00s1309g00010.t01	Wine grape	vacuole	48.59	53.09
VIT_00s1643g00010.t01	Wine grape	vacuole	48.59	53.09
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	10.82	52.85
CDX89588	Canola	cytosol	23.13	50.55
VIT_13s0019g05180.t01	Wine grape	cytosol	39.43	45.14
VIT_02s0154g00080.t01	Wine grape	extracellular	43.26	43.99
VIT_07s0141g00540.t01	Wine grape	extracellular	43.43	43.87
VIT_16s0022g00680.t01	Wine grape	plasma membrane	42.93	43.58
Bra011721.1-P	Field mustard	mitochondrion, plastid	59.57	30.19

Protein Annotations

EntrezGene:100266715	wikigene:100266715	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:AM466085	ProteinID:CAN72539
ProteinID:CAN72539.1	ProteinID:CBI18561	ProteinID:CBI18561.3	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	UniProt:D7SSC9	EMBL:FN594975	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312
GO:GO:0055114	InterPro:IPR008972	EntrezGene:LOC100266715	wikigene:LOC100266715	PFAM:PF00394	PFAM:PF07731
PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF113	SUPFAM:SSF49503	UniParc:UPI0001BE13A6	ArrayExpress:VIT_00s0253g00050
EnsemblPlantsGene:VIT_00s0253g00050	EnsemblPlants:VIT_00s0253g00050.t01	RefSeq:XP_002268020	RefSeq:XP_002268020.2	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:17741398..17746417

Molecular Weight (calculated)

66881.2 Da

IEP (calculated)

9.396

GRAVY (calculated)

-0.101

Length

601 amino acids

Sequence
(BLAST)

001: MLIKAFAHFL RDILCSCRLC MSSFRATKEI PLLHFRTPRV DTFMVGPEFD SLEEQNLGGT ISDRMRPAIF LHFFFGTLAC LSLLCVIAED PSRYYTWTVT
101: YGTISPLGSP QQGILINGQF PGPTIDCVTN DNIIVTVINK LDKPFLITWN GIKQRKTPWQ DGTLGTNCPI PPNSNWTYKF QTKDQIGTYS YFPSTLMHRA
201: AGGFGGFNIA SRSVIPIPYP IPVEEFTLLV GDWYKSSHKA LQAKLDSGIP LPLPNALLIN GLPSGSTFTG EKGKTYKFRV SNVGISTSIN FRIQAHTMTL
301: VEVEGAHTVQ SVYDSLDVHV GQSVAVLVTL HATVKDYFIV ASTRFTKPVL TATSFLKYAG SSTPASEPLP IGPTYQIHWS MMQARTIRRN LTANAARPNP
401: QGSFHYGTIP IQRTLILANS ATKINGTLRY AVNGISYVNP ATPLKLADYY NISGVFKLNS IKDTPPSGPA VFGTSVIGTT LHDLIEIVFQ NNETTLQSWH
501: LDGYTFWTVG FGSGQWTPDM RRRYNLADAN SRHTVQVYPN SWSAVLASLD NKGMWNLRSA IWSRQYLGQQ LYIRVWSNET SLFTEYDVPD NALYCGKAKR
601: P

Best Arabidopsis Sequence Match ( AT4G37160.1 )
(BLAST)

001: MKQTNLLVCK LFIGALFWLG SVLVNAEDPY MFYTWTVTYG TRSPLGVPQQ VILINGQFPG PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG
101: VLGTNCPIQP NSNWTYQFQL KDQIGTYTYF ASTSLHRASG AFGALNINQR SVITTPYPTP DGDFTLLVSD WFSNMTHKDL RKSLDAGSAL PLPDALLING
201: VSKGLIFTGQ QGKTYKFRVS NVGIATSINF RIQNHTMSLI EVEGAHTLQE SYESLDVHVG QSMTVLVTLK ASVRDYFIVA STRFTKPVLT TTASLRYQGS
301: KNAAYGPLPI GPTYHIHWSM KQARTIRMNL TANAARPNPQ GSFHYGTIPI NRTLVLANAA TLIYGKLRYT VNRISYINPT TPLKLADWYN ISGVFDFKTI
401: ISTPTTGPAH IGTSVIDVEL HEFVEIVFQN DERSIQSWHM DGTSAYAVGY GSGTWNVTMR KRYNLVDAVP RHTFQVYPLS WTTILVSLDN KGMWNLRSQI
501: WSRRYLGQEL YVRVWNDEKS LYTEAEPPLN VLYCGKAKRP L

Arabidopsis Description

sks15Sks15 [Source:UniProtKB/TrEMBL;Acc:A0A178UTS2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.