Factsheet for Bra011721.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75611	Canola	extracellular	42.75	93.72
Bra017796.1-P	Field mustard	extracellular	40.64	89.26
AT4G37160.1	Thale cress	extracellular	39.71	87.06
Bra032154.1-P	Field mustard	extracellular	34.91	76.81
KRH04708	Soybean	endoplasmic reticulum	29.26	63.79
KRH57766	Soybean	extracellular	9.87	62.23
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	30.19	59.57
Bra037137.1-P	Field mustard	extracellular	26.05	57.12
Bra036800.1-P	Field mustard	extracellular	25.8	56.56
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	25.97	56.51
Bra030849.1-P	Field mustard	cytosol	7.5	53.94
Bra013582.1-P	Field mustard	extracellular	23.69	51.94
Bra015781.1-P	Field mustard	extracellular	23.61	51.76
Bra008241.1-P	Field mustard	extracellular	23.52	50.91
Bra034943.1-P	Field mustard	extracellular	23.19	50.74
Bra039389.1-P	Field mustard	plasma membrane	21.5	49.04
Bra030850.1-P	Field mustard	plasma membrane	22.68	49.0
Bra001503.1-P	Field mustard	extracellular, plasma membrane	22.85	48.83
Bra001504.1-P	Field mustard	extracellular	22.6	48.64
Bra038001.1-P	Field mustard	extracellular, vacuole	22.68	48.47
Bra025818.1-P	Field mustard	extracellular	22.43	48.28
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	22.51	48.19
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.34	48.01
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.26	47.65
Bra034680.1-P	Field mustard	extracellular, plasma membrane	21.42	45.93
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	18.63	44.83
Bra002824.1-P	Field mustard	cytosol	3.96	44.34
Bra000773.1-P	Field mustard	extracellular	21.75	44.1
Bra018479.1-P	Field mustard	plasma membrane	21.67	43.86
Bra022513.1-P	Field mustard	extracellular	20.15	43.53
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.84	43.53
Bra034914.1-P	Field mustard	extracellular	2.78	42.31
Bra029171.1-P	Field mustard	extracellular	20.66	41.88
Bra022551.1-P	Field mustard	plasma membrane	20.91	41.54
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	22.26	41.31
Bra013877.1-P	Field mustard	plasma membrane	20.32	40.37

Protein Annotations

Gene3D:1.25.40.10	Gene3D:2.60.40.420	MapMan:50.1.10	EnsemblPlantsGene:Bra011721	EnsemblPlants:Bra011721.1	EnsemblPlants:Bra011721.1-P
InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	InterPro:DYW_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002885	InterPro:IPR008972
InterPro:IPR011990	UniProt:M4D5G4	PFAM:PF00394	PFAM:PF01535	PFAM:PF07731	PFAM:PF07732
PFAM:PF13041	PFAM:PF14432	PFscan:PS51375	PANTHER:PTHR11709	PANTHER:PTHR11709:SF113	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	SUPFAM:SSF49503	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025467EE	SEG:seg

Description

AT4G37170 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA01:-:875241..881972

Molecular Weight (calculated)

133859.0 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.297

Length

1186 amino acids

Sequence
(BLAST)

0001: MNQTIARKLS TFVNMSSSYA SMKRFPEKKF FNSNQEDVSV VERLCKGKRF SEAIDVLCEQ KLLIEAVQLL SRAKKPPPAS TYCNLIQICT QRRALEEGKK
0101: VHEHIIASGF VPGVVICNRL MGMYAKCGSL VDARKVFDEM PHRDVCSWNV MVNGYAEAGL VEEARKVFDE MPERDSYSWT AMVNGYVKRD QPEEALVMYS
0201: LMQKERNSKA NIFTVSSAVA AAAEIACIRR GREIHGHVVR AGLDSDEVLW SSLMDMCGKC GCIDEARRIF DKIVVKDVVS WTSMIDRYLK SRRWREGFSL
0301: FSELVGSRTR PNEYTFAGVL NACTDLTTEE FGKQVHGYMT RVGYDPYSFA SSSLVDMYTK CGNMESAKRV VDGCPRPDLF SWTSLIGGYA QNGEPEKALK
0401: YFDLLLESGT KPDHITFVSV LSACTHAGLL EKGLEYFHSI TEKHGMSHTD DHYTCLVDLL ARSGRFEELK DVISQMPMKP SKYLWASVLG GCSTHGNVDL
0501: AEEAARELFE IEPENPATYV TMANIYASAG KWEEEGRMRK RLNQTGITKT PGSSWTEVKR MRHVFIAGDT SHPMHEQIVE YLSELRKKMK EEGYVPATNL
0601: VLHDVEDEQK EENLVYHSEK LAVAFAILST PEGTGVKVFK NLRACVDCHS AIKFISKITK RKITVRDSAR FHCFENGQCS CRDYCAEDPY LFYTWTVTYG
0701: TRSPLGVPQQ VILINGQFPG PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG VLGTNCPIQP NSNWTYQFQL KDQIGTYTYF ASTSMHRASG
0801: AFGALNINQR SVITTPYPTP DGDFTLLVTD WFKMSHKDLR KRLDAGYALP LSDGLLINGV SKGLIFTGEQ GKTYKFRVSN VGIATSINFR IQDHTMSLIE
0901: VEGAHTLQET YESLDVHVGQ SVTVLVNLKA SVRDYYIVAS TRFTKPILNT NASLRYLGSK NAVSGPLPVG PTYHIHWSMK QARTIRMNLT ANAARPNPQG
1001: SFHYGTIPIN RTLILANAAT MIYGKLRYTV NRISYINPET PLKLADCTPT IGPAHFGTSV FDVELHEFVE IIFQNDERSI QSWHMDGTSA FLVGYGSGTW
1101: NVTMRKRYNL VDAVARHTFQ VYPLSWTSIL VSLDNKGMWN LRSQIWSRRY LGQELYVRVW NDEKSIYTEA DPPLNALYCG QAKRPR

Best Arabidopsis Sequence Match ( AT4G37170.1 )
(BLAST)

001: MNHSNARKLT TLHGFILKRN LSSFHASLKR FSDKKFFNPN HEDGGVVVER LCRANRFGEA IDVLCGQKLL REAVQLLGRA KKPPASTYCN LIQVCSQTRA
101: LEEGKKVHEH IRTSGFVPGI VIWNRLLRMY AKCGSLVDAR KVFDEMPNRD LCSWNVMVNG YAEVGLLEEA RKLFDEMTEK DSYSWTAMVT GYVKKDQPEE
201: ALVLYSLMQR VPNSRPNIFT VSIAVAAAAA VKCIRRGKEI HGHIVRAGLD SDEVLWSSLM DMYGKCGCID EARNIFDKIV EKDVVSWTSM IDRYFKSSRW
301: REGFSLFSEL VGSCERPNEY TFAGVLNACA DLTTEELGKQ VHGYMTRVGF DPYSFASSSL VDMYTKCGNI ESAKHVVDGC PKPDLVSWTS LIGGCAQNGQ
401: PDEALKYFDL LLKSGTKPDH VTFVNVLSAC THAGLVEKGL EFFYSITEKH RLSHTSDHYT CLVDLLARSG RFEQLKSVIS EMPMKPSKFL WASVLGGCST
501: YGNIDLAEEA AQELFKIEPE NPVTYVTMAN IYAAAGKWEE EGKMRKRMQE IGVTKRPGSS WTEIKRKRHV FIAADTSHPM YNQIVEFLRE LRKKMKEEGY
601: VPATSLVLHD VEDEQKEENL VYHSEKLAVA FAILSTEEGT AIKVFKNLRS CVDCHGAIKF ISNITKRKIT VRDSTRFHCF ENGQCSCGDY W

Arabidopsis Description

PCMP-H5Pentatricopeptide repeat-containing protein At4g37170 [Source:UniProtKB/Swiss-Prot;Acc:O23169]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.