CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 22945350
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57766	Soybean	extracellular	30.33	87.77
KRH57767	Soybean	cytosol, peroxisome	56.99	86.59
AT4G37160.1	Thale cress	extracellular	67.28	67.65
CDX89586	Canola	mitochondrion	27.57	67.57
Bra017796.1-P	Field mustard	extracellular	66.91	67.41
CDY42716	Canola	extracellular	66.54	67.04
CDX72617	Canola	extracellular	66.54	66.91
CDX69261	Canola	extracellular	64.71	66.79
CDX75611	Canola	extracellular	66.18	66.54
AT2G23630.2	Thale cress	extracellular	66.36	66.12
Bra032154.1-P	Field mustard	extracellular	65.07	65.68
CDY38959	Canola	extracellular	65.07	65.68
KRH57764	Soybean	cytosol, extracellular, plastid	51.29	65.65
KRH76937	Soybean	endoplasmic reticulum	64.89	65.37
KRH28523	Soybean	extracellular	63.97	64.8
KRH04707	Soybean	endoplasmic reticulum	63.79	64.14
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	68.01	61.56
KRH51114	Soybean	endoplasmic reticulum	56.99	56.67
KRH02049	Soybean	nucleus	56.43	55.92
KRH26769	Soybean	endoplasmic reticulum	54.96	55.78
KRH24127	Soybean	nucleus	55.33	55.33
KRH29100	Soybean	nucleus	55.33	55.03
KRH56153	Soybean	mitochondrion, nucleus	53.68	54.38
KRH25361	Soybean	mitochondrion, nucleus	53.31	54.0
KRH06000	Soybean	endoplasmic reticulum	53.49	53.79
KRH51639	Soybean	nucleus	53.49	53.2
KRH60965	Soybean	nucleus	53.31	53.02
KRH17495	Soybean	nucleus	53.31	53.02
CDX89588	Canola	cytosol	26.1	51.64
KRH31599	Soybean	extracellular	51.84	51.09
KRH11453	Soybean	extracellular	41.73	49.78
KRH50513	Soybean	vacuole	48.9	48.36
KRG89471	Soybean	mitochondrion	49.26	48.11
KRG99235	Soybean	mitochondrion	11.03	48.0
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	48.16	47.46
KRH04081	Soybean	extracellular	50.37	46.28
KRH57349	Soybean	endoplasmic reticulum	50.37	45.9
KRH38383	Soybean	cytosol, extracellular, peroxisome	43.75	45.51
KRH18028	Soybean	cytosol	25.92	44.76
KRG92132	Soybean	extracellular	46.88	42.64
KRH56354	Soybean	extracellular	46.32	42.64
KRH62611	Soybean	nucleus	45.96	42.23
KRG93978	Soybean	extracellular	23.9	41.67
KRH46577	Soybean	mitochondrion	48.71	41.6
KRH34656	Soybean	extracellular	45.22	41.0
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	43.75	39.47
Bra011721.1-P	Field mustard	mitochondrion, plastid	63.79	29.26

Protein Annotations

EntrezGene:100810503	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02010484	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_17G180500	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312
GO:GO:0055114	UniProt:I1MW18	InterPro:IPR008972	EnsemblPlants:KRH04708	ProteinID:KRH04708	ProteinID:KRH04708.1
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PFscan:PS51257	PANTHER:PTHR11709	PANTHER:PTHR11709:SF113
SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000233F1FE	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:20576340..20582231

Molecular Weight (calculated)

60441.2 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.174

Length

544 amino acids

Sequence
(BLAST)

001: MKQSILPSVF LGILACWGVL PVTAEDRYQY FTWEITNGTI YPLGVPQQGI LINGQFPGPT VEAITNDNIL VNVINKLDEK FLITWSGIKQ RRTSWQDGVL
101: GTNCPIPPKS NWTYKFQVKD QIGTYTYFPS TKIHKAAGGF GGFNVAQRSV ISIPYPAPDG EFTLLIGDWY KTNHKVLRRL LDAGRSLPYP DALLINGQKD
201: AAVFTGEAGK TYKFRVSNVG MSTSFNFRIQ GHLLKIIEVE GSHTIQESYD SLDVHVGQSV TVLVTLSGSI SDYIIVASSR FTDPIVLTTT ATLRYSGSNS
301: KAQIPLPSGP ATNDVEWSIK QARTIRLNLT ANAARPNPQG SFHYGTIPVQ RTLVLANSKA IINGKLRYAV NGISHINPNT PLKLADWFNI PGVFDLNTIK
401: DVPSPQGTPA KLGTSVIGFT LHDFAEIIFQ NNENYTQSWH MDGSSFYVVG YGNGLWIPDS RKTYNLVDGM TRHTVQVYPN SWSAILVSLD NKGMWNLRSA
501: IWPQRYLGQE LYLRVWNNEQ SVYTETLLPP NALFCGKAKH LPKS

Best Arabidopsis Sequence Match ( AT4G37160.1 )
(BLAST)

001: MKQTNLLVCK LFIGALFWLG SVLVNAEDPY MFYTWTVTYG TRSPLGVPQQ VILINGQFPG PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG
101: VLGTNCPIQP NSNWTYQFQL KDQIGTYTYF ASTSLHRASG AFGALNINQR SVITTPYPTP DGDFTLLVSD WFSNMTHKDL RKSLDAGSAL PLPDALLING
201: VSKGLIFTGQ QGKTYKFRVS NVGIATSINF RIQNHTMSLI EVEGAHTLQE SYESLDVHVG QSMTVLVTLK ASVRDYFIVA STRFTKPVLT TTASLRYQGS
301: KNAAYGPLPI GPTYHIHWSM KQARTIRMNL TANAARPNPQ GSFHYGTIPI NRTLVLANAA TLIYGKLRYT VNRISYINPT TPLKLADWYN ISGVFDFKTI
401: ISTPTTGPAH IGTSVIDVEL HEFVEIVFQN DERSIQSWHM DGTSAYAVGY GSGTWNVTMR KRYNLVDAVP RHTFQVYPLS WTTILVSLDN KGMWNLRSQI
501: WSRRYLGQEL YVRVWNDEKS LYTEAEPPLN VLYCGKAKRP L

Arabidopsis Description

sks15Sks15 [Source:UniProtKB/TrEMBL;Acc:A0A178UTS2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.