CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 8
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24127	Soybean	nucleus	95.43	95.96
VIT_03s0038g03570.t01	Wine grape	extracellular	79.52	80.26
PGSC0003DMT400048000	Potato	extracellular	72.58	76.05
Solyc01g111970.2.1	Tomato	extracellular	72.76	74.25
KRH06000	Soybean	endoplasmic reticulum	73.31	74.12
KRH17495	Soybean	nucleus	73.86	73.86
KRH51639	Soybean	nucleus	73.49	73.49
KRH60965	Soybean	nucleus	73.31	73.31
GSMUA_Achr5P11580_001	Banana	extracellular	70.75	71.8
KRH26769	Soybean	endoplasmic reticulum	68.92	70.34
KRH56153	Soybean	mitochondrion, nucleus	67.64	68.9
AT4G38420.1	Thale cress	extracellular	68.92	68.67
KRH25361	Soybean	mitochondrion, nucleus	67.09	68.34
KRH51114	Soybean	endoplasmic reticulum	68.19	68.19
KRH02049	Soybean	nucleus	68.19	67.94
KRH11453	Soybean	extracellular	53.02	63.6
Bra022513.1-P	Field mustard	extracellular	63.8	63.57
CDX91548	Canola	cytosol	56.67	62.37
CDY64276	Canola	cytosol	69.65	62.05
AT4G28090.1	Thale cress	extracellular	61.43	61.43
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	70.2	60.09
CDY54804	Canola	extracellular, mitochondrion, nucleus, plastid	70.2	60.09
KRH28523	Soybean	extracellular	58.14	59.22
KRH76937	Soybean	endoplasmic reticulum	58.32	59.07
KRH57764	Soybean	cytosol, extracellular, plastid	45.7	58.82
KRH04707	Soybean	endoplasmic reticulum	57.59	58.23
CDY16369	Canola	mitochondrion	48.63	56.12
KRH04708	Soybean	endoplasmic reticulum	55.03	55.33
KRH57766	Soybean	extracellular	18.46	53.72
KRH31599	Soybean	extracellular	52.65	52.17
KRH57767	Soybean	cytosol, peroxisome	33.82	51.68
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	51.74	51.27
KRH50513	Soybean	vacuole	50.82	50.55
KRG89471	Soybean	mitochondrion	50.82	49.91
KRH38383	Soybean	cytosol, extracellular, peroxisome	44.61	46.65
KRG99235	Soybean	mitochondrion	10.6	46.4
KRH18028	Soybean	cytosol	26.51	46.03
KRH62611	Soybean	nucleus	48.99	45.27
KRH56354	Soybean	extracellular	48.81	45.18
KRH04081	Soybean	extracellular	47.53	43.92
KRH57349	Soybean	endoplasmic reticulum	47.71	43.72
KRH46577	Soybean	mitochondrion	50.82	43.64
KRG92132	Soybean	extracellular	47.35	43.31
KRG93978	Soybean	extracellular	23.95	41.99
KRH34656	Soybean	extracellular	45.52	41.5
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	44.06	39.97

Protein Annotations

EntrezGene:100818914	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02006781	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_11G097300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722
GO:GO:0030312	GO:GO:0055114	UniProt:I1LIP3	InterPro:IPR008972	EnsemblPlants:KRH29100	ProteinID:KRH29100
ProteinID:KRH29100.1	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF90
SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000233C823	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:7426344..7431229

Molecular Weight (calculated)

61506.4 Da

IEP (calculated)

9.624

GRAVY (calculated)

-0.192

Length

547 amino acids

Sequence
(BLAST)

001: MKLINKPSQL RSLLSLFCSI LLLLELAFVA AEDPYRFFDW TITYGDIYPL GVKQQVILIN GQFPGPEIYS VTNDNLIINV HNNLTEPFLL SWNGVQQRRN
101: SYQDGVYGTT CPIPPGKNFT YTLQVKDQIG SFFYFPSLAF HKAAGGFGAI KILSRPRIPV PFPDPAGDFS LLIGDWYQIN HKKLQSVLDF GHRLPFPQAV
201: LINGRPSGTT FTVEQGKTYR LRISNVGLQN TLNFRIQGHD MKLVEVEGTH TIQTTYSSLD VHVGQSYSVL ITVDQAPKDY YIVVSTRFTN KIFTSTAILH
301: YSNSQQSVSG PIPSGPTTQI DWSIKQARSI RTNLTASGPR PNPQGSYHYG LINISRTITL VSSTAQVNKK QRYAVNSVSF TPADTPLKLA DYFNIGGIFQ
401: VGSIPDSPSG RPMYLDTSVM GADFRAFVEV VFQNHENIIQ SWHIDGYSFW VVGMDGGVWT PNSRNQYNLR DAVSRSTTQV YPKSWTAIYM ALDNVGMWNM
501: RSEFWARQYL GQQFYLRVYL PVGSIRDEYP IPKNALLCGK AAGRTTR

Best Arabidopsis Sequence Match ( AT4G38420.1 )
(BLAST)

001: MCWWLNGAVW TMMMMTISII SFVQADDPYR FFDWRVTYGN ISPLGIPQRG ILINGQYPGP DIYSVTNDNL IINVHNDLDE PFLLSWNGVQ LRKNSYQDGV
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP

Arabidopsis Description

sks9Putative pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8VYB3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.