CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56354	Soybean	extracellular	95.61	95.77
VIT_16s0022g00680.t01	Wine grape	plasma membrane	70.61	70.61
AT4G25240.1	Thale cress	plasma membrane	68.07	68.42
KRH04081	Soybean	extracellular	68.07	68.07
PGSC0003DMT400035984	Potato	plasma membrane	67.91	67.79
Solyc03g083900.2.1	Tomato	extracellular	67.23	67.23
KRH57349	Soybean	endoplasmic reticulum	67.74	67.17
CDX94466	Canola	extracellular, plasma membrane, plastid, vacuole	67.74	66.94
Bra013877.1-P	Field mustard	plasma membrane	67.4	66.83
CDX89433	Canola	plasma membrane	67.4	66.72
Bra022551.1-P	Field mustard	plasma membrane	66.72	66.16
CDY46940	Canola	plasma membrane	66.72	66.16
CDX91586	Canola	extracellular	66.55	66.0
CDX99917	Canola	plasma membrane	66.55	66.0
Bra029171.1-P	Field mustard	extracellular	65.2	65.98
CDY38866	Canola	extracellular	65.2	65.98
CDY64023	Canola	extracellular	65.03	65.81
AT5G51480.1	Thale cress	extracellular, plasma membrane	64.86	64.86
CDY00478	Canola	cytosol	37.5	57.51
KRH46577	Soybean	mitochondrion	60.64	56.36
Bra034914.1-P	Field mustard	extracellular	7.09	53.85
KRG99235	Soybean	mitochondrion	11.15	52.8
CDY48940	Canola	extracellular	6.93	52.56
KRH57764	Soybean	cytosol, extracellular, plastid	35.64	49.65
KRH60965	Soybean	nucleus	45.61	49.36
KRH29100	Soybean	nucleus	45.27	48.99
KRH06000	Soybean	endoplasmic reticulum	44.76	48.98
KRH26769	Soybean	endoplasmic reticulum	44.26	48.88
KRH51639	Soybean	nucleus	45.1	48.81
KRH17495	Soybean	nucleus	45.1	48.81
KRH24127	Soybean	nucleus	44.76	48.71
KRH56153	Soybean	mitochondrion, nucleus	43.92	48.42
KRH25361	Soybean	mitochondrion, nucleus	43.75	48.23
KRH28523	Soybean	extracellular	42.74	47.11
KRH51114	Soybean	endoplasmic reticulum	43.24	46.8
KRH76937	Soybean	endoplasmic reticulum	42.57	46.67
KRH04707	Soybean	endoplasmic reticulum	42.4	46.4
KRH50513	Soybean	vacuole	42.91	46.18
KRH02049	Soybean	nucleus	42.74	46.08
KRH38383	Soybean	cytosol, extracellular, peroxisome	40.71	46.08
KRH04708	Soybean	endoplasmic reticulum	42.23	45.96
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	42.57	45.65
KRG89471	Soybean	mitochondrion	42.74	45.42
KRH57766	Soybean	extracellular	14.36	45.21
KRH31599	Soybean	extracellular	42.06	45.11
KRH18028	Soybean	cytosol	23.82	44.76
KRG92132	Soybean	extracellular	43.75	43.31
KRH11453	Soybean	extracellular	33.28	43.2
KRH34656	Soybean	extracellular	43.07	42.5
KRH57767	Soybean	cytosol, peroxisome	25.51	42.18
KRG93978	Soybean	extracellular	21.45	40.71
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	40.71	39.97

Protein Annotations

EntrezGene:100810923	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02002325	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_04G119600	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016722	GO:GO:0046658
GO:GO:0055114	UniProt:I1JVS1	InterPro:IPR008972	EnsemblPlants:KRH62611	ProteinID:KRH62611	ProteinID:KRH62611.1
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF123	SUPFAM:SSF49503
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00023BFD4A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:14443110..14447983

Molecular Weight (calculated)

65993.4 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.165

Length

592 amino acids

Sequence
(BLAST)

001: MKMVLSGFSV LLHIVLLSRL CFAGDPTVFT ELRVSYTTVS PLGVPQQVIA INKKFPGPVI NVTTNNHVIV NVYNELDEGL LLSWSGVQMR RNSWQDGVLG
101: TNCPIPPNWN WTYQFQVKDQ IGSFFYFPSL GFQRASGGFG PFVINNREII QIPFARPDGE IFIMIGDWYT QNHTALRATL DGGKNLGIPD GVLINGKGPF
201: QYNTTLVPGG INYETITVDP GKTYRIRVHN VGISTSLNFR IQNHNLLLVE TEGHYTTQTN FTSFDIHAGQ SYSFLLSTDQ NASTDYYIVA SARFVNESLW
301: EKVTGVAILH YSNSKGPATG PLPPPPSDFY DKTASMNQAR SVRQNTSASG ARPNPQGSFH YGSINITDTY VFKVTSLVPI NGTNRATING ISFLKPEVPF
401: RLADKHQLRG TYKLDFPSKP MNRTPVIDRS MINATYKGFI EIILQNNDSS IQNFHLDGYS FFVVGMDYGD WSENSRGSYN KWDAISRCTT QVFPGGWTAI
501: LISLDNVGSW NMRAENLDRW YLGQETYLKI VNPEENGDTE MAAPDNVLYC GPLKSLQKTH STFSAASTLG HSLDLFTVLL GLFAMIFLFL AR

Best Arabidopsis Sequence Match ( AT4G25240.2 )
(BLAST)

001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC

Arabidopsis Description

SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.