Factsheet for Bra013877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89433	Canola	plasma membrane	98.33	98.16
AT4G25240.1	Thale cress	plasma membrane	88.44	89.64
Bra022551.1-P	Field mustard	plasma membrane	77.55	77.55
Bra029171.1-P	Field mustard	extracellular	75.71	77.27
PGSC0003DMT400035984	Potato	plasma membrane	68.68	69.14
Solyc03g083900.2.1	Tomato	extracellular	68.34	68.92
KRH62611	Soybean	nucleus	66.83	67.4
VIT_16s0022g00680.t01	Wine grape	plasma membrane	66.67	67.23
KRH56354	Soybean	extracellular	66.0	66.67
Bra018479.1-P	Field mustard	plasma membrane	64.32	65.53
Bra000773.1-P	Field mustard	extracellular	63.99	65.3
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	56.45	56.64
Bra034914.1-P	Field mustard	extracellular	7.2	55.13
Bra013582.1-P	Field mustard	extracellular	43.55	48.06
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	38.86	47.06
Bra015781.1-P	Field mustard	extracellular	42.55	46.95
Bra008241.1-P	Field mustard	extracellular	42.71	46.53
Bra034943.1-P	Field mustard	extracellular	42.21	46.49
Bra025818.1-P	Field mustard	extracellular	42.55	46.1
Bra039389.1-P	Field mustard	plasma membrane	40.03	45.96
Bra017796.1-P	Field mustard	extracellular	41.37	45.74
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	42.38	45.67
Bra037137.1-P	Field mustard	extracellular	41.21	45.47
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.04	45.47
Bra032154.1-P	Field mustard	extracellular	41.04	45.45
Bra001503.1-P	Field mustard	extracellular, plasma membrane	42.21	45.41
Bra036800.1-P	Field mustard	extracellular	41.04	45.29
Bra001504.1-P	Field mustard	extracellular	41.71	45.19
Bra030849.1-P	Field mustard	cytosol	12.4	44.85
Bra030850.1-P	Field mustard	plasma membrane	41.04	44.63
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	40.7	44.59
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	41.04	44.22
Bra038001.1-P	Field mustard	extracellular, vacuole	41.04	44.14
Bra022513.1-P	Field mustard	extracellular	40.2	43.72
Bra034680.1-P	Field mustard	extracellular, plasma membrane	38.86	41.95
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	42.21	39.44
Bra002824.1-P	Field mustard	cytosol	6.2	34.91
Bra011721.1-P	Field mustard	mitochondrion, plastid	40.37	20.32

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	EnsemblPlantsGene:Bra013877	EnsemblPlants:Bra013877.1	EnsemblPlants:Bra013877.1-P	InterPro:Cu-oxidase
InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0016020	GO:GO:0016491	GO:GO:0046658
GO:GO:0055114	InterPro:IPR008972	UniProt:M4DBL7	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732
PANTHER:PTHR11709	PANTHER:PTHR11709:SF123	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002546841
SEG:seg	:	:	:	:	:

Description

AT4G25240 (E=5e-289) SKS1 | SKS1 (SKU5 SIMILAR 1); copper ion binding / oxidoreductase

Coordinates

chrA01:+:8200278..8202846

Molecular Weight (calculated)

66565.2 Da

IEP (calculated)

7.463

GRAVY (calculated)

-0.173

Length

597 amino acids

Sequence
(BLAST)

001: MATVSLHFSS PSSALASLLC FLLLSGVSFA ADPFVSYDFK LSYITASPLG VPQQVIAVNG QFPGPLLNAT TNYNVVVRVF NNLDESLLLT WSGIQMRRNS
101: WQDGVLGTNC PIPPRWNFTY QFQVKDQIGS FFYSPSLNFQ RASGGFGPIV VNNRNIIPIP FPQPDGEIIF MIGDWYTQDH KALRKILDSG KELGMPDGVL
201: INGKGPYKYN SSVPDGIEYL TAHVDPGKTY RIRVHNVGIS TSLNFRIQNH NLLLVETDGH YTSQTNFTDF DIHVGQSYSF LVTMDQNATS DYYIVASARF
301: VNETVWQRVT GVGILHYSNS NGPASGPLPV PKTDVSAPWS AMTQPRAIRQ NTSASGARPN PQGSFHYGQI NITNTYILRS LPPTMINGSL RATLNGISFV
401: HPITPVRLAD RNKVKGAYKL DFPDRPFDSR PPRLDISMIN ATYKGFIQVV FQNNDTKMQS FHVDGYTFFV VGMDFGVWTE DKKGSYNNYD AISRSTIEVY
501: PGGWTAGLIS LDNVGVWNIR VENLDRWYLG EETYMRIINP EENGQTEMDP PGNVLYCGAL RNMQKDQHHS AATSILNGHL KLMFSMLMAL LALVFTF

Best Arabidopsis Sequence Match ( AT4G25240.2 )
(BLAST)

001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC

Arabidopsis Description

SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.