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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:secretory
EpiLoc:peroxisome
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G048550.1 Barley cytosol, extracellular 25.45 66.67
Bra002824.1-P Field mustard cytosol 41.21 64.15
Solyc05g055720.1.1 Tomato nucleus 32.73 60.0
CDY68876 Canola cytosol 38.79 57.14
AT1G55570.1 Thale cress extracellular, plasma membrane 95.76 28.47
Bra038001.1-P Field mustard extracellular, vacuole 95.76 28.47
Bra039388.1-P Field mustard extracellular, plasma membrane, vacuole 93.33 27.8
Bra001503.1-P Field mustard extracellular, plasma membrane 92.12 27.39
Bra034680.1-P Field mustard extracellular, plasma membrane 90.3 26.94
Bra030850.1-P Field mustard plasma membrane 79.39 23.86
Bra001504.1-P Field mustard extracellular 78.79 23.59
Bra034679.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 76.97 23.01
GSMUA_Achr8P09380_001 Banana extracellular 72.12 22.67
GSMUA_Achr9P04930_001 Banana endoplasmic reticulum, extracellular, plasma membrane 70.91 22.33
GSMUA_Achr8P01580_001 Banana extracellular 67.88 21.71
GSMUA_Achr5P27810_001 Banana extracellular 68.48 21.44
GSMUA_Achr11P... Banana vacuole 68.48 21.44
GSMUA_AchrUn_... Banana extracellular 68.48 21.44
GSMUA_Achr11P... Banana extracellular 67.27 20.98
Bra039389.1-P Field mustard plasma membrane 66.06 20.96
CDX97352 Canola mitochondrion 61.21 20.7
VIT_00s1643g00010.t01 Wine grape vacuole 68.48 20.55
VIT_00s1309g00010.t01 Wine grape vacuole 68.48 20.55
PGSC0003DMT400016672 Potato endoplasmic reticulum 68.48 20.4
Solyc01g056310.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 67.88 20.22
Solyc11g008860.1.1 Tomato extracellular 67.88 20.18
GSMUA_Achr9P16870_001 Banana extracellular, plasma membrane, vacuole 67.88 20.11
PGSC0003DMT400041845 Potato extracellular, plasma membrane, vacuole 67.88 20.07
GSMUA_Achr10P... Banana extracellular, golgi 66.67 19.5
Bra002825.1-P Field mustard extracellular, golgi, vacuole 65.45 19.49
Solyc01g005510.2.1 Tomato extracellular, plasma membrane, vacuole 65.45 19.39
PGSC0003DMT400002554 Potato endoplasmic reticulum, extracellular, golgi 64.85 19.24
Solyc03g063150.2.1 Tomato unclear 64.85 19.24
PGSC0003DMT400082031 Potato extracellular, plasma membrane, vacuole 64.85 19.21
PGSC0003DMT400010905 Potato extracellular, plasma membrane 65.45 19.05
PGSC0003DMT400060352 Potato extracellular 63.64 19.02
HORVU3Hr1G080360.1 Barley extracellular, golgi, vacuole 63.64 18.85
TraesCS3B01G371800.1 Wheat extracellular, golgi, vacuole 63.03 18.7
TraesCS3D01G333700.1 Wheat extracellular, golgi, vacuole 63.03 18.7
EES19711 Sorghum extracellular 63.03 18.6
TraesCS3A01G340200.1 Wheat extracellular, golgi, vacuole 62.42 18.59
GSMUA_Achr3P09610_001 Banana plastid 68.48 18.49
Zm00001d038521_P001 Maize extracellular, plasma membrane, vacuole 62.42 18.43
Zm00001d010630_P003 Maize extracellular, golgi, vacuole 63.64 18.42
HORVU1Hr1G069130.1 Barley extracellular, golgi, plasma membrane 62.42 18.39
Os01t0816700-01 Rice plasma membrane 61.21 18.26
TraesCS1B01G314600.1 Wheat plasma membrane 61.82 18.25
TraesCS1D01G303600.1 Wheat extracellular 61.21 18.07
Zm00001d043090_P001 Maize vacuole 60.61 17.95
EES01652 Sorghum extracellular, golgi, vacuole 60.61 17.92
TraesCS1A01G304100.1 Wheat extracellular, golgi, plasma membrane 60.0 17.71
GSMUA_Achr5P07530_001 Banana extracellular, golgi, vacuole 66.06 17.44
Zm00001d012524_P001 Maize vacuole 58.79 17.35
Bra017796.1-P Field mustard extracellular 55.76 17.04
Bra034943.1-P Field mustard extracellular 55.15 16.79
Bra012117.1-P Field mustard extracellular, golgi, vacuole 55.15 16.7
Bra036800.1-P Field mustard extracellular 54.55 16.64
Bra037137.1-P Field mustard extracellular 53.94 16.45
Bra015781.1-P Field mustard extracellular 53.33 16.27
Bra025818.1-P Field mustard extracellular 53.94 16.15
Bra032154.1-P Field mustard extracellular 52.12 15.96
Bra013582.1-P Field mustard extracellular 50.91 15.53
Bra008241.1-P Field mustard extracellular 51.52 15.51
Bra022513.1-P Field mustard extracellular 50.3 15.12
Bra033564.1-P Field mustard extracellular, mitochondrion, nucleus, plastid 52.73 13.62
Bra022551.1-P Field mustard plasma membrane 48.48 13.4
Bra020700.1-P Field mustard extracellular, plasma membrane, vacuole 47.27 13.11
Bra029171.1-P Field mustard extracellular 44.85 12.65
Bra008223.1-P Field mustard cytosol, extracellular, nucleus 37.58 12.58
Bra000773.1-P Field mustard extracellular 44.24 12.48
Bra018479.1-P Field mustard plasma membrane 44.24 12.46
Bra013877.1-P Field mustard plasma membrane 44.85 12.4
Solyc05g055710.2.1 Tomato extracellular 27.88 10.13
Zm00001d037444_P001 Maize mitochondrion 13.94 8.58
Os05t0485800-00 Rice plasma membrane 33.33 8.08
Zm00001d047156_P002 Maize cytosol 9.7 7.92
Bra011721.1-P Field mustard mitochondrion, plastid 53.94 7.5
Bra034914.1-P Field mustard extracellular 3.03 6.41
Zm00001d004806_P001 Maize plastid 1.21 2.35
Protein Annotations
EnsemblPlants:Bra030849.1EnsemblPlants:Bra030849.1-PEnsemblPlantsGene:Bra030849Gene3D:2.60.40.420GO:GO:0003674GO:GO:0005488
GO:GO:0005507InterPro:Cu-oxidase_3InterPro:CupredoxinInterPro:IPR008972PANTHER:PTHR11709PANTHER:PTHR11709:SF27
PFAM:PF07732SEG:segSUPFAM:SSF49503UniParc:UPI0002547060UniProt:M4EPX8MapMan:35.1
Description
AT1G55570 (E=8e-055) sks12 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase
Coordinates
chrA08:-:284293..286975
Molecular Weight (calculated)
18731.2 Da
IEP (calculated)
7.431
GRAVY (calculated)
-0.419
Length
165 amino acids
Sequence
(BLAST)
001: MVQAEDPYFH HVWNVTYGSA SPLGVPQQVI LINGQFPGPN LNSTSNNNVI VNVFNNLDKP FLITWVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI
101: LLTFDNCGMW NIRSENSERR YLGQQLYASV LSPEKSLRDE YNMPESSLQC GLVKDKPKIN PYAGA
Best Arabidopsis Sequence Match ( AT1G55570.1 )
(BLAST)
001: MKGGVKLLAV CLCVATATVM MVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQFPGPN INSTSNNNVI VNVFNNLDEP FLITWAGIQH RKNCWQDGTA
101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG
201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY
301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY
401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW
501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA
Arabidopsis Description
sks12At1g55570/T5A14_1 [Source:UniProtKB/TrEMBL;Acc:Q9ZVV4]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.