Factsheet for Bra038001.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50029	Canola	extracellular	96.04	98.7
Bra030849.1-P	Field mustard	cytosol	28.47	95.76
AT1G55570.1	Thale cress	extracellular, plasma membrane	91.89	91.89
Bra001503.1-P	Field mustard	extracellular, plasma membrane	88.65	88.65
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	87.21	87.36
Bra034680.1-P	Field mustard	extracellular, plasma membrane	82.52	82.82
Bra030850.1-P	Field mustard	plasma membrane	75.86	76.68
Bra001504.1-P	Field mustard	extracellular	75.5	76.04
Bra039389.1-P	Field mustard	plasma membrane	70.99	75.77
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	74.77	75.18
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	71.89	72.02
VIT_00s1309g00010.t01	Wine grape	vacuole	69.73	70.36
VIT_00s1643g00010.t01	Wine grape	vacuole	69.73	70.36
GSMUA_Achr5P27810_001	Banana	extracellular	66.49	70.02
GSMUA_Achr8P01580_001	Banana	extracellular	64.68	69.57
GSMUA_Achr11P...	Banana	vacuole	65.59	69.07
GSMUA_Achr9P04930_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	64.86	68.7
PGSC0003DMT400041845	Potato	extracellular, plasma membrane, vacuole	67.75	67.38
HORVU4Hr1G048550.1	Barley	cytosol, extracellular	7.57	66.67
PGSC0003DMT400002554	Potato	endoplasmic reticulum, extracellular, golgi	66.49	66.37
Solyc11g008860.1.1	Tomato	extracellular	66.31	66.31
GSMUA_Achr8P09380_001	Banana	extracellular	62.16	65.71
Solyc03g063150.2.1	Tomato	unclear	65.77	65.65
GSMUA_AchrUn_...	Banana	extracellular	62.16	65.46
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	65.23	65.34
PGSC0003DMT400016672	Potato	endoplasmic reticulum	65.05	65.16
Bra002824.1-P	Field mustard	cytosol	12.43	65.09
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	65.05	64.81
GSMUA_Achr9P16870_001	Banana	extracellular, plasma membrane, vacuole	64.86	64.63
PGSC0003DMT400082031	Potato	extracellular, plasma membrane, vacuole	64.5	64.27
PGSC0003DMT400060352	Potato	extracellular	63.42	63.77
GSMUA_Achr11P...	Banana	extracellular	60.72	63.71
Solyc05g055710.2.1	Tomato	extracellular	52.07	63.66
GSMUA_Achr10P...	Banana	extracellular, golgi	64.68	63.65
PGSC0003DMT400010905	Potato	extracellular, plasma membrane	64.68	63.32
Solyc05g055720.1.1	Tomato	nucleus	9.91	61.11
HORVU3Hr1G080360.1	Barley	extracellular, golgi, vacuole	60.54	60.32
GSMUA_Achr3P09610_001	Banana	plastid	66.31	60.23
EES01652	Sorghum	extracellular, golgi, vacuole	60.54	60.22
TraesCS3D01G333700.1	Wheat	extracellular, golgi, vacuole	60.18	60.07
Zm00001d043090_P001	Maize	vacuole	60.18	59.96
TraesCS3B01G371800.1	Wheat	extracellular, golgi, vacuole	60.0	59.89
HORVU1Hr1G069130.1	Barley	extracellular, golgi, plasma membrane	60.36	59.82
TraesCS3A01G340200.1	Wheat	extracellular, golgi, vacuole	59.64	59.75
Os01t0816700-01	Rice	plasma membrane	59.46	59.67
TraesCS1B01G314600.1	Wheat	plasma membrane	60.0	59.57
Zm00001d012524_P001	Maize	vacuole	60.0	59.57
TraesCS1D01G303600.1	Wheat	extracellular	59.46	59.03
Zm00001d038521_P001	Maize	extracellular, plasma membrane, vacuole	59.46	59.03
EES19711	Sorghum	extracellular	59.1	58.68
TraesCS1A01G304100.1	Wheat	extracellular, golgi, plasma membrane	59.1	58.68
Zm00001d010630_P003	Maize	extracellular, golgi, vacuole	60.18	58.6
GSMUA_Achr5P07530_001	Banana	extracellular, golgi, vacuole	64.14	56.96
Bra015781.1-P	Field mustard	extracellular	53.87	55.27
Bra034943.1-P	Field mustard	extracellular	52.79	54.06
Bra036800.1-P	Field mustard	extracellular	52.61	53.97
Bra037137.1-P	Field mustard	extracellular	52.25	53.6
Bra008241.1-P	Field mustard	extracellular	52.79	53.47
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	52.25	53.21
Bra025818.1-P	Field mustard	extracellular	52.25	52.63
Bra017796.1-P	Field mustard	extracellular	50.27	51.67
Bra013582.1-P	Field mustard	extracellular	50.09	51.39
Bra032154.1-P	Field mustard	extracellular	49.73	51.21
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	41.8	47.06
Bra022513.1-P	Field mustard	extracellular	46.49	46.99
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	50.81	44.13
Zm00001d047156_P002	Maize	cytosol	16.04	44.06
Bra018479.1-P	Field mustard	plasma membrane	45.77	43.34
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.31	43.19
Bra000773.1-P	Field mustard	extracellular	45.41	43.08
Bra022551.1-P	Field mustard	plasma membrane	45.95	42.71
Bra034914.1-P	Field mustard	extracellular	5.95	42.31
Bra029171.1-P	Field mustard	extracellular	43.96	41.71
Bra013877.1-P	Field mustard	plasma membrane	44.14	41.04
Zm00001d037444_P001	Maize	mitochondrion	18.38	38.06
Os05t0485800-00	Rice	plasma membrane	39.82	32.45
Zm00001d004806_P001	Maize	plastid	4.86	31.76
Bra011721.1-P	Field mustard	mitochondrion, plastid	48.47	22.68

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	EnsemblPlantsGene:Bra038001	EnsemblPlants:Bra038001.1	EnsemblPlants:Bra038001.1-P	InterPro:Cu-oxidase
InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_2_AO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:IPR008972	UniProt:M4FA87	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732
PANTHER:PTHR11709	PANTHER:PTHR11709:SF27	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253EE32
SEG:seg	:	:	:	:	:

Description

AT1G55570 (E=2e-302) sks12 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase

Coordinates

chrA06:-:181413..183837

Molecular Weight (calculated)

62276.2 Da

IEP (calculated)

9.007

GRAVY (calculated)

-0.343

Length

555 amino acids

Sequence
(BLAST)

001: MKGGVKLWAV CLCLALTTVV IVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQCPGPN LNSTSNNNII VNVFNNLDEP FLLTWNGIQH RKNSWQAGTA
101: GTMCPIPPGT NFTYHFQPKD QIGSYFYYPT TAMHRAAGAF GGLRVNSRLL IPVPYADPED DYTVLINDWY TKSHTQLKNF LDSGRTIGRP DGILINGKAG
201: KGDGSDQPLF TLKQGKTYRI RICNVGLKAS LNFRIQNLKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIL TANQEPKDYY IVASTRFLKN ALTTTGLLRY
301: EGGKGLASSQ LPAAPVGWAW SLNQFRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDSKLR YALNGVSHID TETPLKLAEY FGVTDKVFKY
401: DSISDNPTSD QIKNIKIEPN VLNITHRNFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTI QVYPKCWAAI LLTFDNCGMW
501: NIRSENSERR YLGQQLYASV LSPEKSLRDE YNMPESSLQC GLVKDKPKIN PYAGA

Best Arabidopsis Sequence Match ( AT1G55570.1 )
(BLAST)

001: MKGGVKLLAV CLCVATATVM MVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQFPGPN INSTSNNNVI VNVFNNLDEP FLITWAGIQH RKNCWQDGTA
101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG
201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY
301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY
401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW
501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA

Arabidopsis Description

sks12At1g55570/T5A14_1 [Source:UniProtKB/TrEMBL;Acc:Q9ZVV4]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.