Factsheet for Bra022513.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
vacuole 4
extracellular 5
plasma membrane 4
endoplasmic reticulum 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91548	Canola	cytosol	82.51	91.15
CDY16369	Canola	mitochondrion	75.41	87.34
AT4G28090.1	Thale cress	extracellular	70.49	70.75
PGSC0003DMT400048000	Potato	extracellular	60.84	63.98
KRH29100	Soybean	nucleus	63.57	63.8
KRH24127	Soybean	nucleus	63.02	63.6
Solyc01g111970.2.1	Tomato	extracellular	61.57	63.06
VIT_03s0038g03570.t01	Wine grape	extracellular	61.75	62.55
Bra034943.1-P	Field mustard	extracellular	61.38	62.18
Bra015781.1-P	Field mustard	extracellular	61.02	61.92
Bra008241.1-P	Field mustard	extracellular	60.66	60.77
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	70.13	60.25
GSMUA_Achr5P11580_001	Banana	extracellular	58.29	59.37
Bra013582.1-P	Field mustard	extracellular	57.19	58.04
Bra025818.1-P	Field mustard	extracellular	54.83	54.63
Bra037137.1-P	Field mustard	extracellular	50.27	51.02
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	50.64	51.01
Bra036800.1-P	Field mustard	extracellular	49.73	50.46
Bra030849.1-P	Field mustard	cytosol	15.12	50.3
Bra032154.1-P	Field mustard	extracellular	46.45	47.31
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	42.26	47.06
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.36	46.93
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	47.18	46.75
Bra039389.1-P	Field mustard	plasma membrane	44.08	46.54
Bra038001.1-P	Field mustard	extracellular, vacuole	46.99	46.49
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.63	46.38
Bra001504.1-P	Field mustard	extracellular	46.45	46.28
Bra001503.1-P	Field mustard	extracellular, plasma membrane	46.63	46.13
Bra017796.1-P	Field mustard	extracellular	45.17	45.93
Bra002824.1-P	Field mustard	cytosol	8.56	44.34
Bra030850.1-P	Field mustard	plasma membrane	44.08	44.08
Bra034680.1-P	Field mustard	extracellular, plasma membrane	43.72	43.4
Bra018479.1-P	Field mustard	plasma membrane	44.99	42.15
Bra000773.1-P	Field mustard	extracellular	44.63	41.88
Bra029171.1-P	Field mustard	extracellular	43.9	41.2
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	44.08	40.67
Bra013877.1-P	Field mustard	plasma membrane	43.72	40.2
Bra022551.1-P	Field mustard	plasma membrane	43.53	40.03
Bra034914.1-P	Field mustard	extracellular	4.92	34.62
Bra011721.1-P	Field mustard	mitochondrion, plastid	43.53	20.15

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	EnsemblPlantsGene:Bra022513	EnsemblPlants:Bra022513.1	EnsemblPlants:Bra022513.1-P	InterPro:Cu-oxidase
InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008972
UniProt:M4E165	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF64
SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000254558E	:	:	:

Description

AT4G38420 (E=5e-232) sks9 | sks9 (SKU5 Similar 9); copper ion binding / oxidoreductase

Coordinates

chrA02:+:9322595..9325245

Molecular Weight (calculated)

62574.6 Da

IEP (calculated)

9.914

GRAVY (calculated)

-0.356

Length

549 amino acids

Sequence
(BLAST)

001: MAWWPDGGFL MMMMMTIISF VQAEDSNRFF DLRVTYGNVS VTKYVPPTRV ILINGKFPGP ELYLVTNDNL IINVHNDLDE PFLLSWNGLH LKRNSYQDGV
101: YGTTCPIPPG KNYTYAFHLE DQIGSFFYFP SLAVQKAAGG FGAIRILSRP GTPVPFPQPA GDFTILIGDW YTGEDHKDLK ARLDGGRMIP RPYSVLINGN
201: EDTASTSLTV DKGKTYRFRI SNVGLQLSLN FEILGHMLKL VEVEGTYTIQ TKFTSLDIHV GQSYSVLVTM DQPPQNYSIV VGTRFTDSRS TNRIILHYSN
301: SKSSKFVPNR QPDNDIDFSI KQARSIKTNL TASRQRQDAQ GSYHYGRIKI SRTLILESSA GVVNRKQRYA INGVSFVPAD TPLKLADYFK IKGVFKVGSI
401: PDKPGRAGIR LETAVMGVHH KDFLEIVFQN REKYVQTYHL DGYNFWVVGI GNRWSTWSHA SRRDYNLRDA ISRSTTQVYP KSWTAIYVAF DNVGMWNFRS
501: EFWARQYLGQ QFYFRVHSPA NSTRDEYPLP KNALLCGRAS NRHRRDFIP

Best Arabidopsis Sequence Match ( AT4G38420.1 )
(BLAST)

001: MCWWLNGAVW TMMMMTISII SFVQADDPYR FFDWRVTYGN ISPLGIPQRG ILINGQYPGP DIYSVTNDNL IINVHNDLDE PFLLSWNGVQ LRKNSYQDGV
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP

Arabidopsis Description

sks9Putative pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8VYB3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.