Factsheet for VIT_03s0038g03570.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00470.t01	Wine grape	extracellular	81.18	81.33
PGSC0003DMT400048000	Potato	extracellular	77.31	80.27
KRH24127	Soybean	nucleus	80.44	80.15
KRH29100	Soybean	nucleus	80.26	79.52
Solyc01g111970.2.1	Tomato	extracellular	76.38	77.24
GSMUA_Achr5P11580_001	Banana	extracellular	75.65	76.07
VIT_12s0059g00770.t01	Wine grape	extracellular	75.28	75.42
VIT_10s0116g01610.t01	Wine grape	extracellular	73.25	73.52
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	16.42	72.36
AT4G38420.1	Thale cress	extracellular	69.37	68.49
VIT_00s0253g00040.t01	Wine grape	extracellular	61.99	62.69
CDY64276	Canola	cytosol	70.11	61.89
Bra022513.1-P	Field mustard	extracellular	62.55	61.75
AT4G28090.1	Thale cress	extracellular	62.18	61.61
CDX91548	Canola	cytosol	56.09	61.17
CDY54804	Canola	extracellular, mitochondrion, nucleus, plastid	70.85	60.09
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	70.85	60.09
CDY16369	Canola	mitochondrion	48.52	55.49
VIT_00s1643g00010.t01	Wine grape	vacuole	56.09	55.27
VIT_00s1309g00010.t01	Wine grape	vacuole	56.09	55.27
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	55.9	50.42
VIT_07s0141g00540.t01	Wine grape	extracellular	50.74	46.22
VIT_13s0019g05180.t01	Wine grape	cytosol	44.65	46.1
VIT_02s0154g00080.t01	Wine grape	extracellular	50.0	45.85
VIT_16s0022g00680.t01	Wine grape	plasma membrane	49.63	45.44

Protein Annotations

EntrezGene:100265895	wikigene:100265895	Gene3D:2.60.40.420	MapMan:50.1.10	ProteinID:CBI37764	ProteinID:CBI37764.3
InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin
UniProt:D7U4U5	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972
EntrezGene:LOC100265895	wikigene:LOC100265895	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709
PANTHER:PTHR11709:SF90	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015C89C1	ArrayExpress:VIT_03s0038g03570
EnsemblPlantsGene:VIT_03s0038g03570	EnsemblPlants:VIT_03s0038g03570.t01	unigene:Vvi.6829	RefSeq:XP_002282214	RefSeq:XP_002282214.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:2582051..2585088

Molecular Weight (calculated)

60228.8 Da

IEP (calculated)

9.686

GRAVY (calculated)

-0.189

Length

542 amino acids

Sequence
(BLAST)

001: MAQNGGIILL LCATFSVLAM VGAEDPYRFF EWNVTYGDIY PLGVRQQGIL INGQFPGPDI YSVTNDNLII NVHNSLPEPF LISWNGVQQR RNSFEDGVYG
101: TTCPIPPGKN FTYILQVKDQ IGSFFYFPSL AFHKAAGGFG GIRILSRPRI PVPFPDPAGD YTILIGDWYT HNHNTLKAIL DRGRRLPFPD GILINGRGAN
201: AASFTVERGK TYRLRISNVG LQNSLNFRIQ GHKMTLVEVE GTHTLQTSYS SLDVHVGQSY SVLVTADQAA KDYYIAVSSR FTEKVLTSSA VLHYSNSVSP
301: VSGPLPGGPT TQIDYSLNQA RSIRTNLTAS GPRPNPQGSY HYGLINITRT IKLGNTAGQV NGKQRYAVNS VSFIPADTPL KLADYFKIGG VFRIGSIPDQ
401: PSGKKMYLDT SVMGADFRAF VEIVFENRES IIQSWHLDGY SFWVVGMNGG VWTPASRNQY NLRDAVSRCT TQVYPKSWTA VYIALDNVGM WNLRTEFWAR
501: QYLGQQFYLR VYSPVGSIRD EYPIPKNALL CGRAAGRKTR SL

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.