Factsheet for VIT_12s0059g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26769	Soybean	endoplasmic reticulum	85.77	86.57
Solyc07g052240.2.1	Tomato	nucleus	84.84	84.53
PGSC0003DMT400074510	Potato	extracellular	83.36	83.36
KRH25361	Soybean	mitochondrion, nucleus	82.62	83.24
GSMUA_Achr5P26550_001	Banana	cytosol	19.96	83.08
KRH56153	Soybean	mitochondrion, nucleus	82.44	83.05
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	18.85	82.93
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	73.01	82.29
Solyc07g052230.2.1	Tomato	extracellular	80.78	81.38
VIT_10s0116g01610.t01	Wine grape	extracellular	79.67	79.81
VIT_18s0001g00470.t01	Wine grape	extracellular	78.37	78.37
TraesCS7B01G359700.1	Wheat	extracellular	76.34	76.2
Os06t0678800-01	Rice	extracellular	75.97	75.83
VIT_03s0038g03570.t01	Wine grape	extracellular	75.42	75.28
HORVU7Hr1G105620.1	Barley	extracellular	75.42	75.28
TraesCS7A01G459400.1	Wheat	extracellular	75.6	75.18
EER90222	Sorghum	extracellular	75.6	74.91
TraesCS7D01G447200.1	Wheat	extracellular	75.05	74.91
GSMUA_Achr5P26560_001	Banana	extracellular	47.87	74.64
Zm00001d014366_P002	Maize	extracellular	75.6	74.64
TraesCS2B01G274800.1	Wheat	vacuole	74.31	73.76
TraesCS2D01G230800.1	Wheat	extracellular	74.12	73.58
TraesCS2A01G224600.1	Wheat	extracellular	73.94	73.39
Os07t0510900-01	Rice	extracellular, peroxisome	62.85	73.28
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	73.75	72.41
EER97278	Sorghum	extracellular, golgi	73.2	72.26
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	71.72	69.53
VIT_00s0253g00040.t01	Wine grape	extracellular	63.4	63.99
VIT_00s1643g00010.t01	Wine grape	vacuole	56.01	55.09
VIT_00s1309g00010.t01	Wine grape	vacuole	56.01	55.09
Os07t0510833-00	Rice	extracellular	10.17	55.0
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	57.3	51.58
VIT_02s0154g00080.t01	Wine grape	extracellular	52.5	48.05
VIT_13s0019g05180.t01	Wine grape	cytosol	45.47	46.86
VIT_16s0022g00680.t01	Wine grape	plasma membrane	50.28	45.95
VIT_07s0141g00540.t01	Wine grape	extracellular	50.46	45.88

Protein Annotations

EntrezGene:100260211	wikigene:100260211	Gene3D:2.60.40.420	MapMan:50.1.10	ProteinID:CBI28811	ProteinID:CBI28811.3
InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_2_AO-like	InterPro:CuRO_3_AO-like
InterPro:Cupredoxin	UniProt:D7TE88	EMBL:FN595765	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009506	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312	GO:GO:0055114
InterPro:IPR008972	EntrezGene:LOC100260211	wikigene:LOC100260211	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732
PANTHER:PTHR11709	PANTHER:PTHR11709:SF106	SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000198445A	ArrayExpress:VIT_12s0059g00770
EnsemblPlantsGene:VIT_12s0059g00770	EnsemblPlants:VIT_12s0059g00770.t01	unigene:Vvi.10226	RefSeq:XP_002269614	RefSeq:XP_002269614.1	:

Description

No Description!

Coordinates

chr12:+:5575071..5578295

Molecular Weight (calculated)

60010.8 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.282

Length

541 amino acids

Sequence
(BLAST)

001: MGDYRAVSWV LLVFVSVTCI SGEDPYRFFT WNVTYGDIYP LGVKQQGILI NGQFPGPPIE SVTNDNLIVS VYNSLDEPFL LSWNGVQQRR NSWQDGVYGT
101: NCPIPPGQNF TYVLQVKDQI GSYFYFPSLA FHKAAGGYGG IKISSRPLIP VPFPPPAGDY TILAGDWYKK NHTDLKAILD GGSDLPFPDG LLINGRGSNG
201: YTFTVDQGKT YRFRISNVGI ATSLNFRIQG HKMLLVEVEG THALQNTYSS LDIHLGQSYS VLVTADQPAQ DYYIVVSTRF TSQVLTTTST LHYSNSAGRV
301: SGPPPGGPTI QTDWSLNQAR SIRRNLTASG PRPNPQGSYH YGLINTTHTI RLANSAPVIN GKQRYAVNSV SFIPADTPLK LADYFKISGV FNLGSIPDNP
401: TGGGGYLQTS VMAADFRGFA EVVFENPEDT LQSWHIDGHN FFVVGMDGGQ WTPSSRLSYN LRDTISRCTV QVYPKSWTAL YMPLDNVGMW NVRSENWARQ
501: YLGQQFYLRV YSPANSWRDE YPIPKNALLC GRASGRKTRP L

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.